(7 nodes) Mixed, incl. Phospholipid transport, and Peptidase M48 network (Nitratiruptor sp. SB1552)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NIS_1034	ABC transporter, ATP-binding protein. (254 aa)
	NIS_1035	Conserved hypothetical protein. (157 aa)
	NIS_1037	Zinc-metallo protease. (418 aa)
	NIS_1038	ABC transport system ATP-binding protein. (647 aa)
	NIS_1039	Divalent cation transporter; Mg2+/Co2+. (256 aa)
	NIS_1059	ABC transporter, permease. (263 aa)
	NIS_1335	Conserved hypothetical protein. (488 aa)

Your Current Organism:

Nitratiruptor sp. SB1552

NCBI taxonomy Id: 387092
Other names: N. sp. SB155-2, Nitratiruptor sp. SB155-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NIS_1034	NIS_1035	ABC transporter, ATP-binding protein.	Conserved hypothetical protein.	0.780
NIS_1034	NIS_1037	ABC transporter, ATP-binding protein.	Zinc-metallo protease.	0.773
NIS_1034	NIS_1038	ABC transporter, ATP-binding protein.	ABC transport system ATP-binding protein.	0.567
NIS_1034	NIS_1039	ABC transporter, ATP-binding protein.	Divalent cation transporter; Mg2+/Co2+.	0.560
NIS_1034	NIS_1059	ABC transporter, ATP-binding protein.	ABC transporter, permease.	0.999
NIS_1034	NIS_1335	ABC transporter, ATP-binding protein.	Conserved hypothetical protein.	0.996
NIS_1035	NIS_1034	Conserved hypothetical protein.	ABC transporter, ATP-binding protein.	0.780
NIS_1035	NIS_1037	Conserved hypothetical protein.	Zinc-metallo protease.	0.792
NIS_1035	NIS_1038	Conserved hypothetical protein.	ABC transport system ATP-binding protein.	0.579
NIS_1035	NIS_1039	Conserved hypothetical protein.	Divalent cation transporter; Mg2+/Co2+.	0.543
NIS_1037	NIS_1034	Zinc-metallo protease.	ABC transporter, ATP-binding protein.	0.773
NIS_1037	NIS_1035	Zinc-metallo protease.	Conserved hypothetical protein.	0.792
NIS_1037	NIS_1038	Zinc-metallo protease.	ABC transport system ATP-binding protein.	0.586
NIS_1037	NIS_1039	Zinc-metallo protease.	Divalent cation transporter; Mg2+/Co2+.	0.543
NIS_1038	NIS_1034	ABC transport system ATP-binding protein.	ABC transporter, ATP-binding protein.	0.567
NIS_1038	NIS_1035	ABC transport system ATP-binding protein.	Conserved hypothetical protein.	0.579
NIS_1038	NIS_1037	ABC transport system ATP-binding protein.	Zinc-metallo protease.	0.586
NIS_1038	NIS_1039	ABC transport system ATP-binding protein.	Divalent cation transporter; Mg2+/Co2+.	0.773
NIS_1039	NIS_1034	Divalent cation transporter; Mg2+/Co2+.	ABC transporter, ATP-binding protein.	0.560
NIS_1039	NIS_1035	Divalent cation transporter; Mg2+/Co2+.	Conserved hypothetical protein.	0.543