(16 nodes) U2 snRNP network (Lupinus angustifolius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TanjilG_31560	Small nuclear ribonucleoprotein Sm D2. (104 aa)
	TanjilG_31128	Small nuclear ribonucleoprotein G. (79 aa)
	TanjilG_01895	Uncharacterized protein. (110 aa)
	TanjilG_21684	PSP domain-containing protein. (581 aa)
	TanjilG_24325	Uncharacterized protein. (376 aa)
	TanjilG_32450	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	TanjilG_28740	Matrin-type domain-containing protein. (319 aa)
	TanjilG_09444	Sm domain-containing protein. (88 aa)
	TanjilG_09467	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	TanjilG_09719	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (131 aa)
	TanjilG_29584	RRM domain-containing protein. (124 aa)
	TanjilG_24610	Sm domain-containing protein. (79 aa)
	TanjilG_24634	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (208 aa)
	TanjilG_24717	CPSF_A domain-containing protein. (1213 aa)
	TanjilG_07980	TOG domain-containing protein. (1259 aa)
	TanjilG_19047	Small nuclear ribonucleoprotein-associated protein. (277 aa)

Your Current Organism:

Lupinus angustifolius

NCBI taxonomy Id: 3871
Other names: L. angustifolius, Lupinus angustifolius L., narrow-leaved blue lupine

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TanjilG_01895	TanjilG_07980	A0A1J7GVX2	A0A4P1RMC9	Uncharacterized protein.	TOG domain-containing protein.	0.992
TanjilG_01895	TanjilG_09444	A0A1J7GVX2	A0A394DEU6	Uncharacterized protein.	Sm domain-containing protein.	0.996
TanjilG_01895	TanjilG_09467	A0A1J7GVX2	A0A394DG15	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
TanjilG_01895	TanjilG_09719	A0A1J7GVX2	A0A4P1QWV0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.977
TanjilG_01895	TanjilG_19047	A0A1J7GVX2	A0A4P1RS25	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.979
TanjilG_01895	TanjilG_21684	A0A1J7GVX2	A0A1J7GW76	Uncharacterized protein.	PSP domain-containing protein.	0.986
TanjilG_01895	TanjilG_24325	A0A1J7GVX2	A0A1J7H3K9	Uncharacterized protein.	Uncharacterized protein.	0.992
TanjilG_01895	TanjilG_24610	A0A1J7GVX2	A0A4P1RK82	Uncharacterized protein.	Sm domain-containing protein.	0.968
TanjilG_01895	TanjilG_24634	A0A1J7GVX2	A0A4P1RKI1	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.976
TanjilG_01895	TanjilG_24717	A0A1J7GVX2	A0A4P1RL07	Uncharacterized protein.	CPSF_A domain-containing protein.	0.992
TanjilG_01895	TanjilG_28740	A0A1J7GVX2	A0A1J7HV30	Uncharacterized protein.	Matrin-type domain-containing protein.	0.990
TanjilG_01895	TanjilG_29584	A0A1J7GVX2	A0A4P1R5L8	Uncharacterized protein.	RRM domain-containing protein.	0.996
TanjilG_01895	TanjilG_31128	A0A1J7GVX2	A0A1J7GCW0	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.998
TanjilG_01895	TanjilG_31560	A0A1J7GVX2	A0A1J7G1F6	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.987
TanjilG_01895	TanjilG_32450	A0A1J7GVX2	A0A1J7HHN9	Uncharacterized protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
TanjilG_07980	TanjilG_01895	A0A4P1RMC9	A0A1J7GVX2	TOG domain-containing protein.	Uncharacterized protein.	0.992
TanjilG_07980	TanjilG_09444	A0A4P1RMC9	A0A394DEU6	TOG domain-containing protein.	Sm domain-containing protein.	0.978
TanjilG_07980	TanjilG_09467	A0A4P1RMC9	A0A394DG15	TOG domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.988
TanjilG_07980	TanjilG_09719	A0A4P1RMC9	A0A4P1QWV0	TOG domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.956
TanjilG_07980	TanjilG_19047	A0A4P1RMC9	A0A4P1RS25	TOG domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.968