STRINGSTRING
ENSGAGP00000000769 ENSGAGP00000000769 SF3A1 SF3A1 SNRPB SNRPB SNRPC SNRPC ENSGAGP00000004181 ENSGAGP00000004181 TXNL4A TXNL4A SNRPE SNRPE SF3B3 SF3B3 SNRPG SNRPG DDX23 DDX23 PRPF8 PRPF8 SF3A2 SF3A2 PRPF6 PRPF6 SNRPA1 SNRPA1 ENSGAGP00000014719 ENSGAGP00000014719 SNRPD1 SNRPD1 ENSGAGP00000015142 ENSGAGP00000015142 SF3B6 SF3B6 ENSGAGP00000016921 ENSGAGP00000016921 ENSGAGP00000017299 ENSGAGP00000017299 ENSGAGP00000019106 ENSGAGP00000019106 DDX46 DDX46 SF3A3 SF3A3 SF3B1 SF3B1 PHF5A PHF5A SNRPB2 SNRPB2 SNRPD2 SNRPD2 SNRNP200 SNRNP200 SNRNP40 SNRNP40 SNRPA SNRPA ENSGAGP00000032079 ENSGAGP00000032079 SNRPD3 SNRPD3 SF3B2 SF3B2 DDX42 DDX42 LSM10 LSM10 SF3B4 SF3B4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSGAGP00000000769Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SF3A1Splicing factor 3a subunit 1. (758 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
ENSGAGP00000004181Uncharacterized protein. (306 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SNRPESmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
SF3B3Splicing factor 3b subunit 3. (1206 aa)
SNRPGSmall nuclear ribonucleoprotein G. (76 aa)
DDX23DEAD-box helicase 23. (813 aa)
PRPF8Pre-mRNA processing factor 8. (2335 aa)
SF3A2Splicing factor 3a subunit 2. (270 aa)
PRPF6Pre-mRNA processing factor 6. (977 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
ENSGAGP00000014719Sm domain-containing protein. (57 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
ENSGAGP00000015142Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
ENSGAGP00000016921RRM domain-containing protein. (196 aa)
ENSGAGP00000017299Ig-like domain-containing protein. (310 aa)
ENSGAGP00000019106Sm domain-containing protein. (83 aa)
DDX46DEAD-box helicase 46. (1056 aa)
SF3A3Splicing factor 3a subunit 3. (501 aa)
SF3B1Splicing factor 3b subunit 1. (1328 aa)
PHF5APHD finger protein 5A. (102 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (226 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2. (144 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2056 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)
SNRPASmall nuclear ribonucleoprotein polypeptide A. (327 aa)
ENSGAGP00000032079Sm domain-containing protein. (85 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
SF3B2Splicing factor 3b subunit 2. (859 aa)
DDX42DEAD-box helicase 42. (953 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
SF3B4Splicing factor 3b subunit 4. (477 aa)
Your Current Organism:
Gopherus agassizii
NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise
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