(11 nodes) Myogenic factor, and DNA-binding protein inhibitor network (Gopherus agassizii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MYOD1	Myogenic factor. (290 aa)
	TCF12	Transcription factor 12. (734 aa)
	ID4	Inhibitor of DNA binding 4, HLH protein. (157 aa)
	ID2	Inhibitor of DNA binding 2. (134 aa)
	ENSGAGP00000020678	Uncharacterized protein. (50 aa)
	TCF4	Transcription factor 4. (537 aa)
	ID3	Inhibitor of DNA binding 3, HLH protein. (125 aa)
	MYF6	Myogenic factor 6. (242 aa)
	MYF5	Myogenic factor. (254 aa)
	ID1	Inhibitor of DNA binding 1, HLH protein. (146 aa)
	MYOG	Myogenin. (227 aa)

Your Current Organism:

Gopherus agassizii

NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGAGP00000020678	ID1	ENSGAGP00000020678	ENSGAGP00000028747	Uncharacterized protein.	Inhibitor of DNA binding 1, HLH protein.	0.813
ENSGAGP00000020678	ID2	ENSGAGP00000020678	ENSGAGP00000020308	Uncharacterized protein.	Inhibitor of DNA binding 2.	0.754
ENSGAGP00000020678	ID3	ENSGAGP00000020678	ENSGAGP00000023176	Uncharacterized protein.	Inhibitor of DNA binding 3, HLH protein.	0.613
ENSGAGP00000020678	ID4	ENSGAGP00000020678	ENSGAGP00000013295	Uncharacterized protein.	Inhibitor of DNA binding 4, HLH protein.	0.754
ENSGAGP00000020678	MYF5	ENSGAGP00000020678	ENSGAGP00000024039	Uncharacterized protein.	Myogenic factor.	0.851
ENSGAGP00000020678	MYF6	ENSGAGP00000020678	ENSGAGP00000024036	Uncharacterized protein.	Myogenic factor 6.	0.808
ENSGAGP00000020678	MYOD1	ENSGAGP00000020678	ENSGAGP00000001197	Uncharacterized protein.	Myogenic factor.	0.867
ENSGAGP00000020678	MYOG	ENSGAGP00000020678	ENSGAGP00000036539	Uncharacterized protein.	Myogenin.	0.817
ID1	ENSGAGP00000020678	ENSGAGP00000028747	ENSGAGP00000020678	Inhibitor of DNA binding 1, HLH protein.	Uncharacterized protein.	0.813
ID1	ID2	ENSGAGP00000028747	ENSGAGP00000020308	Inhibitor of DNA binding 1, HLH protein.	Inhibitor of DNA binding 2.	0.821
ID1	ID3	ENSGAGP00000028747	ENSGAGP00000023176	Inhibitor of DNA binding 1, HLH protein.	Inhibitor of DNA binding 3, HLH protein.	0.888
ID1	ID4	ENSGAGP00000028747	ENSGAGP00000013295	Inhibitor of DNA binding 1, HLH protein.	Inhibitor of DNA binding 4, HLH protein.	0.830
ID1	MYF5	ENSGAGP00000028747	ENSGAGP00000024039	Inhibitor of DNA binding 1, HLH protein.	Myogenic factor.	0.674
ID1	MYOD1	ENSGAGP00000028747	ENSGAGP00000001197	Inhibitor of DNA binding 1, HLH protein.	Myogenic factor.	0.873
ID1	TCF12	ENSGAGP00000028747	ENSGAGP00000009957	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 12.	0.813
ID1	TCF4	ENSGAGP00000028747	ENSGAGP00000022404	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 4.	0.813
ID2	ENSGAGP00000020678	ENSGAGP00000020308	ENSGAGP00000020678	Inhibitor of DNA binding 2.	Uncharacterized protein.	0.754
ID2	ID1	ENSGAGP00000020308	ENSGAGP00000028747	Inhibitor of DNA binding 2.	Inhibitor of DNA binding 1, HLH protein.	0.821
ID2	ID3	ENSGAGP00000020308	ENSGAGP00000023176	Inhibitor of DNA binding 2.	Inhibitor of DNA binding 3, HLH protein.	0.854
ID2	ID4	ENSGAGP00000020308	ENSGAGP00000013295	Inhibitor of DNA binding 2.	Inhibitor of DNA binding 4, HLH protein.	0.774