(5 nodes) Ragulator complex network (Gopherus agassizii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LAMTOR1	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1. (160 aa)
	LAMTOR5	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5. (91 aa)
	SLC38A9	Solute carrier family 38 member 9. (564 aa)
	LAMTOR2	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2. (138 aa)
	LAMTOR3	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3. (201 aa)

Your Current Organism:

Gopherus agassizii

NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LAMTOR1	LAMTOR2	ENSGAGP00000002014	ENSGAGP00000028581	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
LAMTOR1	LAMTOR3	ENSGAGP00000002014	ENSGAGP00000029854	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
LAMTOR1	LAMTOR5	ENSGAGP00000002014	ENSGAGP00000016129	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
LAMTOR1	SLC38A9	ENSGAGP00000002014	ENSGAGP00000027550	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Solute carrier family 38 member 9.	0.998
LAMTOR2	LAMTOR1	ENSGAGP00000028581	ENSGAGP00000002014	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.999
LAMTOR2	LAMTOR3	ENSGAGP00000028581	ENSGAGP00000029854	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
LAMTOR2	LAMTOR5	ENSGAGP00000028581	ENSGAGP00000016129	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
LAMTOR2	SLC38A9	ENSGAGP00000028581	ENSGAGP00000027550	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Solute carrier family 38 member 9.	0.998
LAMTOR3	LAMTOR1	ENSGAGP00000029854	ENSGAGP00000002014	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.999
LAMTOR3	LAMTOR2	ENSGAGP00000029854	ENSGAGP00000028581	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
LAMTOR3	LAMTOR5	ENSGAGP00000029854	ENSGAGP00000016129	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
LAMTOR3	SLC38A9	ENSGAGP00000029854	ENSGAGP00000027550	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Solute carrier family 38 member 9.	0.996
LAMTOR5	LAMTOR1	ENSGAGP00000016129	ENSGAGP00000002014	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.999
LAMTOR5	LAMTOR2	ENSGAGP00000016129	ENSGAGP00000028581	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
LAMTOR5	LAMTOR3	ENSGAGP00000016129	ENSGAGP00000029854	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
LAMTOR5	SLC38A9	ENSGAGP00000016129	ENSGAGP00000027550	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	Solute carrier family 38 member 9.	0.998
SLC38A9	LAMTOR1	ENSGAGP00000027550	ENSGAGP00000002014	Solute carrier family 38 member 9.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.998
SLC38A9	LAMTOR2	ENSGAGP00000027550	ENSGAGP00000028581	Solute carrier family 38 member 9.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.998
SLC38A9	LAMTOR3	ENSGAGP00000027550	ENSGAGP00000029854	Solute carrier family 38 member 9.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.996
SLC38A9	LAMTOR5	ENSGAGP00000027550	ENSGAGP00000016129	Solute carrier family 38 member 9.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.998