(13 nodes) P-body assembly network (Gopherus agassizii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PATL2	PAT1 homolog 2. (340 aa)
	EIF4ENIF1	Eukaryotic translation initiation factor 4E nuclear import factor 1. (980 aa)
	NOCT	Nocturnin. (365 aa)
	PATL1	PAT1 homolog 1, processing body mRNA decay factor. (769 aa)
	ATXN2	Ataxin 2. (984 aa)
	DYNC1H1	Dynein cytoplasmic 1 heavy chain 1. (4549 aa)
	CNOT7	CCR4-NOT transcription complex subunit 7. (285 aa)
	ENSGAGP00000021923	LSM14 domain-containing protein. (109 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
	RC3H1	Ring finger and CCCH-type domains 1. (1124 aa)
	C19orf54	Chromosome 19 open reading frame 54. (322 aa)
	DDX6	DEAD-box helicase 6; Belongs to the DEAD box helicase family. (483 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)

Your Current Organism:

Gopherus agassizii

NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATXN2	DDX6	ENSGAGP00000006230	ENSGAGP00000028424	Ataxin 2.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.941
ATXN2	ENSGAGP00000021923	ENSGAGP00000006230	ENSGAGP00000021923	Ataxin 2.	LSM14 domain-containing protein.	0.499
ATXN2	RC3H1	ENSGAGP00000006230	ENSGAGP00000024893	Ataxin 2.	Ring finger and CCCH-type domains 1.	0.491
C19orf54	DDX6	ENSGAGP00000027721	ENSGAGP00000028424	Chromosome 19 open reading frame 54.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.883
C19orf54	ENSGAGP00000021923	ENSGAGP00000027721	ENSGAGP00000021923	Chromosome 19 open reading frame 54.	LSM14 domain-containing protein.	0.423
C19orf54	LSM4	ENSGAGP00000027721	ENSGAGP00000024375	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.992
C19orf54	PATL1	ENSGAGP00000027721	ENSGAGP00000005500	Chromosome 19 open reading frame 54.	PAT1 homolog 1, processing body mRNA decay factor.	0.950
C19orf54	PATL2	ENSGAGP00000027721	ENSGAGP00000002777	Chromosome 19 open reading frame 54.	PAT1 homolog 2.	0.950
CNOT7	DDX6	ENSGAGP00000021261	ENSGAGP00000028424	CCR4-NOT transcription complex subunit 7.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.962
CNOT7	NOCT	ENSGAGP00000021261	ENSGAGP00000005436	CCR4-NOT transcription complex subunit 7.	Nocturnin.	0.881
CNOT7	PATL1	ENSGAGP00000021261	ENSGAGP00000005500	CCR4-NOT transcription complex subunit 7.	PAT1 homolog 1, processing body mRNA decay factor.	0.921
CNOT7	PATL2	ENSGAGP00000021261	ENSGAGP00000002777	CCR4-NOT transcription complex subunit 7.	PAT1 homolog 2.	0.882
CNOT7	RC3H1	ENSGAGP00000021261	ENSGAGP00000024893	CCR4-NOT transcription complex subunit 7.	Ring finger and CCCH-type domains 1.	0.748
DDX6	ATXN2	ENSGAGP00000028424	ENSGAGP00000006230	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Ataxin 2.	0.941
DDX6	C19orf54	ENSGAGP00000028424	ENSGAGP00000027721	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Chromosome 19 open reading frame 54.	0.883
DDX6	CNOT7	ENSGAGP00000028424	ENSGAGP00000021261	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	CCR4-NOT transcription complex subunit 7.	0.962
DDX6	EIF4ENIF1	ENSGAGP00000028424	ENSGAGP00000003900	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.987
DDX6	ENSGAGP00000021923	ENSGAGP00000028424	ENSGAGP00000021923	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	LSM14 domain-containing protein.	0.979
DDX6	LSM3	ENSGAGP00000028424	ENSGAGP00000036276	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.883
DDX6	LSM4	ENSGAGP00000028424	ENSGAGP00000024375	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.976