(38 nodes) Intermediate filament protein, conserved site network (Gopherus agassizii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSGAGP00000030733	IF rod domain-containing protein; Belongs to the intermediate filament family. (348 aa)
	ENSGAGP00000000076	IF rod domain-containing protein; Belongs to the intermediate filament family. (162 aa)
	ENSGAGP00000000178	IF rod domain-containing protein; Belongs to the intermediate filament family. (352 aa)
	DES	Desmin; Belongs to the intermediate filament family. (523 aa)
	ENSGAGP00000001724	IF rod domain-containing protein; Belongs to the intermediate filament family. (395 aa)
	NEFH	Neurofilament heavy; Belongs to the intermediate filament family. (932 aa)
	LMNB2	Lamin B2; Belongs to the intermediate filament family. (601 aa)
	ENSGAGP00000010093	IF rod domain-containing protein; Belongs to the intermediate filament family. (504 aa)
	ENSGAGP00000010495	IF rod domain-containing protein; Belongs to the intermediate filament family. (559 aa)
	KRT75	Keratin 75; Belongs to the intermediate filament family. (471 aa)
	ENSGAGP00000011884	IF rod domain-containing protein; Belongs to the intermediate filament family. (269 aa)
	ENSGAGP00000012915	IF rod domain-containing protein; Belongs to the intermediate filament family. (543 aa)
	PRPH	Peripherin; Belongs to the intermediate filament family. (481 aa)
	ENSGAGP00000014081	IF rod domain-containing protein; Belongs to the intermediate filament family. (1755 aa)
	VIM	Vimentin; Belongs to the intermediate filament family. (457 aa)
	ENSGAGP00000017519	IF rod domain-containing protein; Belongs to the intermediate filament family. (404 aa)
	ENSGAGP00000019609	IF rod domain-containing protein; Belongs to the intermediate filament family. (833 aa)
	NEFL	Neurofilament light; Belongs to the intermediate filament family. (564 aa)
	ENSGAGP00000019726	IF rod domain-containing protein; Belongs to the intermediate filament family. (261 aa)
	ENSGAGP00000019750	IF rod domain-containing protein; Belongs to the intermediate filament family. (575 aa)
	ENSGAGP00000019758	IF rod domain-containing protein; Belongs to the intermediate filament family. (347 aa)
	ENSGAGP00000019762	IF rod domain-containing protein; Belongs to the intermediate filament family. (638 aa)
	ENSGAGP00000021033	IF rod domain-containing protein; Belongs to the intermediate filament family. (481 aa)
	SYNM	Synemin; Belongs to the intermediate filament family. (1711 aa)
	ENSGAGP00000027797	Uncharacterized protein; Belongs to the intermediate filament family. (592 aa)
	LMNA	Lamin A/C; Belongs to the intermediate filament family. (663 aa)
	ENSGAGP00000030345	IF rod domain-containing protein; Belongs to the intermediate filament family. (300 aa)
	KRT12	Keratin 12; Belongs to the intermediate filament family. (517 aa)
	KRT20	Keratin 20; Belongs to the intermediate filament family. (441 aa)
	KRT23	Keratin 23; Belongs to the intermediate filament family. (405 aa)
	ENSGAGP00000034194	IF rod domain-containing protein; Belongs to the intermediate filament family. (130 aa)
	KRT18	Keratin 18; Belongs to the intermediate filament family. (430 aa)
	KRT8	Keratin 8; Belongs to the intermediate filament family. (488 aa)
	ENSGAGP00000035827	IF rod domain-containing protein; Belongs to the intermediate filament family. (222 aa)
	ENSGAGP00000036256	IF rod domain-containing protein; Belongs to the intermediate filament family. (469 aa)
	ENSGAGP00000036383	IF rod domain-containing protein; Belongs to the intermediate filament family. (479 aa)
	ENSGAGP00000036385	IF rod domain-containing protein; Belongs to the intermediate filament family. (473 aa)
	LMNB1	Lamin B1; Belongs to the intermediate filament family. (587 aa)

Your Current Organism:

Gopherus agassizii

NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DES	ENSGAGP00000014081	ENSGAGP00000000183	ENSGAGP00000014081	Desmin; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.658
ENSGAGP00000000076	KRT8	ENSGAGP00000000076	ENSGAGP00000035501	IF rod domain-containing protein; Belongs to the intermediate filament family.	Keratin 8; Belongs to the intermediate filament family.	0.616
ENSGAGP00000000178	KRT8	ENSGAGP00000000178	ENSGAGP00000035501	IF rod domain-containing protein; Belongs to the intermediate filament family.	Keratin 8; Belongs to the intermediate filament family.	0.616
ENSGAGP00000001724	ENSGAGP00000010093	ENSGAGP00000001724	ENSGAGP00000010093	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.438
ENSGAGP00000001724	ENSGAGP00000010495	ENSGAGP00000001724	ENSGAGP00000010495	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.429
ENSGAGP00000001724	ENSGAGP00000011884	ENSGAGP00000001724	ENSGAGP00000011884	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.425
ENSGAGP00000001724	ENSGAGP00000012915	ENSGAGP00000001724	ENSGAGP00000012915	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.418
ENSGAGP00000001724	ENSGAGP00000019726	ENSGAGP00000001724	ENSGAGP00000019726	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.414
ENSGAGP00000001724	KRT75	ENSGAGP00000001724	ENSGAGP00000011874	IF rod domain-containing protein; Belongs to the intermediate filament family.	Keratin 75; Belongs to the intermediate filament family.	0.424
ENSGAGP00000001724	KRT8	ENSGAGP00000001724	ENSGAGP00000035501	IF rod domain-containing protein; Belongs to the intermediate filament family.	Keratin 8; Belongs to the intermediate filament family.	0.633
ENSGAGP00000010093	ENSGAGP00000001724	ENSGAGP00000010093	ENSGAGP00000001724	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.438
ENSGAGP00000010093	ENSGAGP00000010495	ENSGAGP00000010093	ENSGAGP00000010495	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.412
ENSGAGP00000010093	ENSGAGP00000021033	ENSGAGP00000010093	ENSGAGP00000021033	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.443
ENSGAGP00000010093	ENSGAGP00000030733	ENSGAGP00000010093	ENSGAGP00000030733	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.423
ENSGAGP00000010093	ENSGAGP00000036383	ENSGAGP00000010093	ENSGAGP00000036383	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.425
ENSGAGP00000010093	ENSGAGP00000036385	ENSGAGP00000010093	ENSGAGP00000036385	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.429
ENSGAGP00000010093	KRT12	ENSGAGP00000010093	ENSGAGP00000030608	IF rod domain-containing protein; Belongs to the intermediate filament family.	Keratin 12; Belongs to the intermediate filament family.	0.443
ENSGAGP00000010093	KRT20	ENSGAGP00000010093	ENSGAGP00000030729	IF rod domain-containing protein; Belongs to the intermediate filament family.	Keratin 20; Belongs to the intermediate filament family.	0.561
ENSGAGP00000010093	KRT8	ENSGAGP00000010093	ENSGAGP00000035501	IF rod domain-containing protein; Belongs to the intermediate filament family.	Keratin 8; Belongs to the intermediate filament family.	0.676
ENSGAGP00000010495	ENSGAGP00000001724	ENSGAGP00000010495	ENSGAGP00000001724	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.429