(14 nodes) Tropinone reductase, and 1-deoxy-D-xylulose-5-phosphate synthase activity network (Medicago truncatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MTR_0003s0530	Putative strictosidine synthase transcription factor WD40-like family. (205 aa)
	A0A072U029	NAD(P)-binding rossmann-fold protein. (266 aa)
	A0A072U038	NAD(P)-binding rossmann-fold protein. (265 aa)
	A0A072U041	Enoyl-(Acyl carrier) reductase. (266 aa)
	A0A072U0P7	NAD(P)-binding rossmann-fold protein. (266 aa)
	A0A072UKE5	Enoyl-(Acyl carrier) reductase. (268 aa)
	A0A072UYU2	NAD(P)-binding rossmann-fold protein. (269 aa)
	dxs2-2	Putative 1-deoxy-D-xylulose-5-phosphate synthase. (710 aa)
	G7IFK9_MEDTR	Putative 1-deoxy-D-xylulose-5-phosphate synthase. (718 aa)
	G7IQK6_MEDTR	Strictosidine synthase. (233 aa)
	G7IQL0_MEDTR	Strictosidine synthase. (336 aa)
	G7JT54_MEDTR	Strictosidine synthase. (168 aa)
	I3SNR4_MEDTR	NAD(P)-binding rossmann-fold protein. (267 aa)
	dxs2	Putative 1-deoxy-D-xylulose-5-phosphate synthase. (711 aa)

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072U029	G7IFK9_MEDTR	A0A072U029	G7IFK9	NAD(P)-binding rossmann-fold protein.	Putative 1-deoxy-D-xylulose-5-phosphate synthase.	0.625
A0A072U029	G7IQK6_MEDTR	A0A072U029	G7IQK6	NAD(P)-binding rossmann-fold protein.	Strictosidine synthase.	0.689
A0A072U029	G7IQL0_MEDTR	A0A072U029	G7IQL0	NAD(P)-binding rossmann-fold protein.	Strictosidine synthase.	0.689
A0A072U029	G7JT54_MEDTR	A0A072U029	G7JT54	NAD(P)-binding rossmann-fold protein.	Strictosidine synthase.	0.689
A0A072U029	MTR_0003s0530	A0A072U029	A0A072TKD7	NAD(P)-binding rossmann-fold protein.	Putative strictosidine synthase transcription factor WD40-like family.	0.689
A0A072U029	dxs2	A0A072U029	Q8L692	NAD(P)-binding rossmann-fold protein.	Putative 1-deoxy-D-xylulose-5-phosphate synthase.	0.623
A0A072U029	dxs2-2	A0A072U029	A7DY38	NAD(P)-binding rossmann-fold protein.	Putative 1-deoxy-D-xylulose-5-phosphate synthase.	0.625
A0A072U038	G7IFK9_MEDTR	A0A072U038	G7IFK9	NAD(P)-binding rossmann-fold protein.	Putative 1-deoxy-D-xylulose-5-phosphate synthase.	0.625
A0A072U038	G7IQK6_MEDTR	A0A072U038	G7IQK6	NAD(P)-binding rossmann-fold protein.	Strictosidine synthase.	0.689
A0A072U038	G7IQL0_MEDTR	A0A072U038	G7IQL0	NAD(P)-binding rossmann-fold protein.	Strictosidine synthase.	0.689
A0A072U038	G7JT54_MEDTR	A0A072U038	G7JT54	NAD(P)-binding rossmann-fold protein.	Strictosidine synthase.	0.689
A0A072U038	MTR_0003s0530	A0A072U038	A0A072TKD7	NAD(P)-binding rossmann-fold protein.	Putative strictosidine synthase transcription factor WD40-like family.	0.689
A0A072U038	dxs2	A0A072U038	Q8L692	NAD(P)-binding rossmann-fold protein.	Putative 1-deoxy-D-xylulose-5-phosphate synthase.	0.623
A0A072U038	dxs2-2	A0A072U038	A7DY38	NAD(P)-binding rossmann-fold protein.	Putative 1-deoxy-D-xylulose-5-phosphate synthase.	0.625
A0A072U041	G7IFK9_MEDTR	A0A072U041	G7IFK9	Enoyl-(Acyl carrier) reductase.	Putative 1-deoxy-D-xylulose-5-phosphate synthase.	0.625
A0A072U041	G7IQK6_MEDTR	A0A072U041	G7IQK6	Enoyl-(Acyl carrier) reductase.	Strictosidine synthase.	0.689
A0A072U041	G7IQL0_MEDTR	A0A072U041	G7IQL0	Enoyl-(Acyl carrier) reductase.	Strictosidine synthase.	0.689
A0A072U041	G7JT54_MEDTR	A0A072U041	G7JT54	Enoyl-(Acyl carrier) reductase.	Strictosidine synthase.	0.689
A0A072U041	MTR_0003s0530	A0A072U041	A0A072TKD7	Enoyl-(Acyl carrier) reductase.	Putative strictosidine synthase transcription factor WD40-like family.	0.689
A0A072U041	dxs2	A0A072U041	Q8L692	Enoyl-(Acyl carrier) reductase.	Putative 1-deoxy-D-xylulose-5-phosphate synthase.	0.623