7 items (Medicago truncatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A072TTH7	AT hook motif DNA-binding family protein. (160 aa)
	A0A072UQB6	Uncharacterized protein. (336 aa)
	A0A072URM0	SAUR-like auxin-responsive family protein. (153 aa)
	A0A072VQ74	Epidermal patterning factor-like protein. (122 aa)
	G7IEC2_MEDTR	Plastocyanin-like domain protein. (102 aa)
	G7J6G2_MEDTR	CUP-shaped cotyledon-like protein. (353 aa)
	G7K3Q5_MEDTR	DYW_deaminase domain-containing protein. (100 aa)

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072TTH7	A0A072UQB6	A0A072TTH7	A0A072UQB6	AT hook motif DNA-binding family protein.	Uncharacterized protein.	0.525
A0A072TTH7	A0A072URM0	A0A072TTH7	A0A072URM0	AT hook motif DNA-binding family protein.	SAUR-like auxin-responsive family protein.	0.525
A0A072TTH7	A0A072VQ74	A0A072TTH7	A0A072VQ74	AT hook motif DNA-binding family protein.	Epidermal patterning factor-like protein.	0.485
A0A072TTH7	G7IEC2_MEDTR	A0A072TTH7	G7IEC2	AT hook motif DNA-binding family protein.	Plastocyanin-like domain protein.	0.540
A0A072TTH7	G7J6G2_MEDTR	A0A072TTH7	G7J6G2	AT hook motif DNA-binding family protein.	CUP-shaped cotyledon-like protein.	0.490
A0A072TTH7	G7K3Q5_MEDTR	A0A072TTH7	G7K3Q5	AT hook motif DNA-binding family protein.	DYW_deaminase domain-containing protein.	0.515
A0A072UQB6	A0A072TTH7	A0A072UQB6	A0A072TTH7	Uncharacterized protein.	AT hook motif DNA-binding family protein.	0.525
A0A072UQB6	A0A072URM0	A0A072UQB6	A0A072URM0	Uncharacterized protein.	SAUR-like auxin-responsive family protein.	0.514
A0A072UQB6	A0A072VQ74	A0A072UQB6	A0A072VQ74	Uncharacterized protein.	Epidermal patterning factor-like protein.	0.496
A0A072UQB6	G7IEC2_MEDTR	A0A072UQB6	G7IEC2	Uncharacterized protein.	Plastocyanin-like domain protein.	0.526
A0A072UQB6	G7J6G2_MEDTR	A0A072UQB6	G7J6G2	Uncharacterized protein.	CUP-shaped cotyledon-like protein.	0.488
A0A072UQB6	G7K3Q5_MEDTR	A0A072UQB6	G7K3Q5	Uncharacterized protein.	DYW_deaminase domain-containing protein.	0.500
A0A072URM0	A0A072TTH7	A0A072URM0	A0A072TTH7	SAUR-like auxin-responsive family protein.	AT hook motif DNA-binding family protein.	0.525
A0A072URM0	A0A072UQB6	A0A072URM0	A0A072UQB6	SAUR-like auxin-responsive family protein.	Uncharacterized protein.	0.514
A0A072URM0	A0A072VQ74	A0A072URM0	A0A072VQ74	SAUR-like auxin-responsive family protein.	Epidermal patterning factor-like protein.	0.537
A0A072URM0	G7IEC2_MEDTR	A0A072URM0	G7IEC2	SAUR-like auxin-responsive family protein.	Plastocyanin-like domain protein.	0.508
A0A072URM0	G7J6G2_MEDTR	A0A072URM0	G7J6G2	SAUR-like auxin-responsive family protein.	CUP-shaped cotyledon-like protein.	0.524
A0A072URM0	G7K3Q5_MEDTR	A0A072URM0	G7K3Q5	SAUR-like auxin-responsive family protein.	DYW_deaminase domain-containing protein.	0.542
A0A072VQ74	A0A072TTH7	A0A072VQ74	A0A072TTH7	Epidermal patterning factor-like protein.	AT hook motif DNA-binding family protein.	0.485
A0A072VQ74	A0A072UQB6	A0A072VQ74	A0A072UQB6	Epidermal patterning factor-like protein.	Uncharacterized protein.	0.496