(90 nodes) Ribonuclease H-like superfamily network (Medicago truncatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A072U0K5	RNase H domain-containing protein. (187 aa)
	A0A072U1K8	Global transcription factor. (634 aa)
	A0A072U1S1	Uncharacterized protein. (96 aa)
	A0A072U831	RNase H domain-containing protein. (176 aa)
	G7JIR3_MEDTR	Putative post-transcriptional gene silencing PAZ-Argonaute family protein; Belongs to the argonaute family. (977 aa)
	A0A072UA07	Argonaute 1A-like protein. (117 aa)
	A0A072UAC3	RNase H domain-containing protein. (388 aa)
	A0A072UAD3	Eukaryotic translation initiation factor 2c, putative. (903 aa)
	A0A072UAP7	RNase H domain-containing protein. (134 aa)
	A0A072UEP6	Ninja-family protein AFP1. (570 aa)
	A0A072UFC8	Ribonuclease H superfamily polynucleotidyl transferase. (265 aa)
	A0A072UIC2	Exosome complex exonuclease RRP6. (882 aa)
	A0A072UJ99	Putative pre-16S rRNA nuclease, ribonuclease H-like domain-containing protein. (231 aa)
	A0A072UJW9	IPP transferase. (1039 aa)
	A0A072UKM0	Putative post-transcriptional gene silencing PAZ-Argonaute family protein. (1008 aa)
	A0A072ULY5	Uncharacterized protein. (132 aa)
	A0A072UM25	Argonaute protein 1A; Belongs to the argonaute family. (1115 aa)
	A0A072URH4	Putative ribonuclease H-like domain-containing protein. (492 aa)
	A0A072UUV0	RNase H domain-containing protein. (116 aa)
	A0A072UVR4	Putative post-transcriptional gene silencing PAZ-Argonaute family protein. (971 aa)
	A0A072UXQ8	Organelle transcript processing protein, putative. (1150 aa)
	A0A072V1N5	DNA polymerase. (1086 aa)
	A0A072V2D9	Copia-like polyprotein/retrotransposon, putative. (111 aa)
	A0A072V5U8	RNase H domain-containing protein. (96 aa)
	A0A072V607	Uncharacterized protein. (57 aa)
	A0A072V850	RNase H domain-containing protein. (211 aa)
	A0A072VA82	Eukaryotic translation initiation factor 2c, putative. (923 aa)
	A0A072VB36	RNA exonuclease-like protein. (283 aa)
	A0A072VEV5	Putative ribonuclease D. (352 aa)
	A0A072VF22	Small RNA degrading nuclease. (550 aa)
	A0A072VFB2	Small RNA degrading nuclease. (571 aa)
	A0A072VGH6	Salt stress response/antifungal domain protein. (709 aa)
	A0A072VGL3	RNase H domain-containing protein. (125 aa)
	A0A072VHY4	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family. (979 aa)
	G7JDJ9_MEDTR	3'-5' exonuclease domain protein. (930 aa)
	G7IFV9_MEDTR	Putative post-transcriptional gene silencing PAZ-Argonaute family protein. (1029 aa)
	G7IGP1_MEDTR	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family. (903 aa)
	G7II78_MEDTR	Putative JAB1/MPN/MOV34 metalloenzyme domain, ribonuclease H-like domain, PRO8NT. (2356 aa)
	G7IIX5_MEDTR	General transcription factor-like zinc finger protein, putative. (299 aa)
	G7IJ50_MEDTR	Holliday junction resolvase-like protein. (129 aa)
	G7IKP7_MEDTR	Pre-mRNA-processing-splicing factor. (827 aa)
	G7IQQ4_MEDTR	RNase H domain-containing protein. (247 aa)
	G7IVG6_MEDTR	Eukaryotic translation initiation factor 2c, putative. (876 aa)
	G7IXD5_MEDTR	Transmembrane protein, putative. (67 aa)
	G7IZE5_MEDTR	Uncharacterized protein. (139 aa)
	G7J1V4_MEDTR	PolI-like B DNA polymerase. (1055 aa)
	G7J1V6_MEDTR	PolI-like B DNA polymerase. (1158 aa)
	G7J6D8_MEDTR	Eukaryotic translation initiation factor 2c, putative. (182 aa)
	G7J9J9_MEDTR	Eukaryotic translation initiation factor 2c, putative. (909 aa)
	G7JAY0_MEDTR	Tyrosine kinase family protein. (314 aa)
	A0A072VIL9	B3 DNA-binding domain protein. (830 aa)
	A0A072VIQ7	Eukaryotic translation initiation factor 2c, putative. (594 aa)
	A0A072VJ45	RNA exonuclease-like protein. (350 aa)
	A0A072VPN5	Putative post-transcriptional gene silencing PAZ-Argonaute family protein; Belongs to the argonaute family. (978 aa)
	A0A072W210	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (298 aa)
	B7FI33_MEDTR	Putative exoribonuclease II transcription factor C2H2 family. (366 aa)
	G7IBB5_MEDTR	RNase H domain-containing protein. (162 aa)
	G7KNX3_MEDTR	Uncharacterized protein. (149 aa)
	G7KE54_MEDTR	Uncharacterized protein. (162 aa)
	G7KCW7_MEDTR	Uncharacterized protein. (91 aa)
	G7KB24_MEDTR	Uncharacterized protein. (71 aa)
	G7L4U0_MEDTR	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1638 aa)
	G7L2P7_MEDTR	Global transcription factor. (744 aa)
	G7L0J6_MEDTR	Putative ribonuclease D. (693 aa)
	G7K774_MEDTR	Transmembrane protein, putative. (134 aa)
	G7K6L8_MEDTR	DNA polymerase. (1526 aa)
	G7K6H7_MEDTR	Transmembrane protein, putative. (98 aa)
	G7K3G7_MEDTR	Putative DNA-directed DNA polymerase. (1084 aa)
	G7K2Z2_MEDTR	Putative post-transcriptional gene silencing PAZ-Argonaute family protein. (892 aa)
	G7IBD0_MEDTR	Piwi domain protein. (432 aa)
	G7K2Y8_MEDTR	Eukaryotic translation initiation factor 2c, putative. (948 aa)
	G7K2E1_MEDTR	Uncharacterized protein. (90 aa)
	G7K121_MEDTR	RNase H domain-containing protein. (92 aa)
	G7JWK2_MEDTR	Putative post-transcriptional gene silencing PAZ-Argonaute family protein; Belongs to the argonaute family. (1016 aa)
	G7JU69_MEDTR	Putative post-transcriptional gene silencing PAZ-Argonaute family protein; Belongs to the argonaute family. (876 aa)
	G7JR34_MEDTR	RNase H domain-containing protein. (100 aa)
	G7JKW4_MEDTR	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2203 aa)
	G7KYM6_MEDTR	DNA polymerase. (1924 aa)
	G7KWH7_MEDTR	DNA polymerase III, epsilon subunit-like protein. (332 aa)
	G7KTX2_MEDTR	Uncharacterized protein. (80 aa)
	G7ZVN4_MEDTR	RNase H domain-containing protein. (107 aa)
	G7LGB7_MEDTR	RNase H domain-containing protein. (121 aa)
	G7LDQ1_MEDTR	Putative ribonuclease H-like domain-containing protein. (308 aa)
	G7LDI5_MEDTR	Pre-mRNA-processing-splicing factor 8. (2337 aa)
	G7LAD2_MEDTR	Putative ribonuclease H-like domain-containing protein. (281 aa)
	G7KP40_MEDTR	RNase H domain-containing protein. (143 aa)
	MTR_1065s0010	DUF5051 domain-containing protein. (169 aa)
	A0A072TQZ6	Endonuclease/exonuclease/phosphatase family protein. (529 aa)
	A0A072TTJ8	Uncharacterized protein. (140 aa)
	A0A072TYR1	FAR1 DNA-binding domain protein. (462 aa)

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072U1K8	G7L2P7_MEDTR	A0A072U1K8	G7L2P7	Global transcription factor.	Global transcription factor.	0.704
A0A072U1K8	G7L4U0_MEDTR	A0A072U1K8	G7L4U0	Global transcription factor.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.544
A0A072UFC8	A0A072UIC2	A0A072UFC8	A0A072UIC2	Ribonuclease H superfamily polynucleotidyl transferase.	Exosome complex exonuclease RRP6.	0.497
A0A072UFC8	A0A072VB36	A0A072UFC8	A0A072VB36	Ribonuclease H superfamily polynucleotidyl transferase.	RNA exonuclease-like protein.	0.509
A0A072UFC8	A0A072VF22	A0A072UFC8	A0A072VF22	Ribonuclease H superfamily polynucleotidyl transferase.	Small RNA degrading nuclease.	0.954
A0A072UFC8	A0A072VFB2	A0A072UFC8	A0A072VFB2	Ribonuclease H superfamily polynucleotidyl transferase.	Small RNA degrading nuclease.	0.954
A0A072UFC8	A0A072VJ45	A0A072UFC8	A0A072VJ45	Ribonuclease H superfamily polynucleotidyl transferase.	RNA exonuclease-like protein.	0.509
A0A072UFC8	A0A072W210	A0A072UFC8	A0A072W210	Ribonuclease H superfamily polynucleotidyl transferase.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.427
A0A072UFC8	B7FI33_MEDTR	A0A072UFC8	B7FI33	Ribonuclease H superfamily polynucleotidyl transferase.	Putative exoribonuclease II transcription factor C2H2 family.	0.509
A0A072UFC8	G7JDJ9_MEDTR	A0A072UFC8	G7JDJ9	Ribonuclease H superfamily polynucleotidyl transferase.	3'-5' exonuclease domain protein.	0.497
A0A072UFC8	G7KWH7_MEDTR	A0A072UFC8	G7KWH7	Ribonuclease H superfamily polynucleotidyl transferase.	DNA polymerase III, epsilon subunit-like protein.	0.447
A0A072UFC8	G7L0J6_MEDTR	A0A072UFC8	G7L0J6	Ribonuclease H superfamily polynucleotidyl transferase.	Putative ribonuclease D.	0.497
A0A072UFC8	G7LDQ1_MEDTR	A0A072UFC8	G7LDQ1	Ribonuclease H superfamily polynucleotidyl transferase.	Putative ribonuclease H-like domain-containing protein.	0.546
A0A072UIC2	A0A072UFC8	A0A072UIC2	A0A072UFC8	Exosome complex exonuclease RRP6.	Ribonuclease H superfamily polynucleotidyl transferase.	0.497
A0A072UIC2	A0A072VB36	A0A072UIC2	A0A072VB36	Exosome complex exonuclease RRP6.	RNA exonuclease-like protein.	0.428
A0A072UIC2	A0A072VF22	A0A072UIC2	A0A072VF22	Exosome complex exonuclease RRP6.	Small RNA degrading nuclease.	0.468
A0A072UIC2	A0A072VFB2	A0A072UIC2	A0A072VFB2	Exosome complex exonuclease RRP6.	Small RNA degrading nuclease.	0.468
A0A072UIC2	A0A072VJ45	A0A072UIC2	A0A072VJ45	Exosome complex exonuclease RRP6.	RNA exonuclease-like protein.	0.428
A0A072UIC2	B7FI33_MEDTR	A0A072UIC2	B7FI33	Exosome complex exonuclease RRP6.	Putative exoribonuclease II transcription factor C2H2 family.	0.428
A0A072UIC2	G7JDJ9_MEDTR	A0A072UIC2	G7JDJ9	Exosome complex exonuclease RRP6.	3'-5' exonuclease domain protein.	0.678