26 items (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V7CQX3_PHAVU	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (301 aa)
	V7CGZ1_PHAVU	Uncharacterized protein. (314 aa)
	V7CI46_PHAVU	Uncharacterized protein. (232 aa)
	V7C8K4_PHAVU	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (271 aa)
	V7CT27_PHAVU	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (272 aa)
	V7D2E0_PHAVU	Uncharacterized protein. (249 aa)
	V7C335_PHAVU	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (447 aa)
	V7C2V8_PHAVU	Uncharacterized protein. (128 aa)
	V7C080_PHAVU	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (447 aa)
	V7BYV4_PHAVU	Uncharacterized protein. (225 aa)
	V7BW61_PHAVU	Tr-type G domain-containing protein. (843 aa)
	V7BTG3_PHAVU	Tr-type G domain-containing protein. (843 aa)
	V7BL11_PHAVU	Protein-lysine N-methyltransferase PHAVU_007G264300g; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family. (234 aa)
	V7BG20_PHAVU	Uncharacterized protein. (735 aa)
	V7BFQ4_PHAVU	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (448 aa)
	V7BCQ1_PHAVU	Kin17_mid domain-containing protein. (396 aa)
	V7BBN5_PHAVU	Uncharacterized protein. (365 aa)
	V7B7T9_PHAVU	Uncharacterized protein. (223 aa)
	V7C8Y1_PHAVU	Uncharacterized protein. (197 aa)
	V7C560_PHAVU	Uncharacterized protein. (141 aa)
	V7B0Y7_PHAVU	Protein-lysine N-methyltransferase PHAVU_008G009300g; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family. (342 aa)
	V7AXN3_PHAVU	Uncharacterized protein. (537 aa)
	V7ASN1_PHAVU	Uncharacterized protein. (353 aa)
	V7ADR6_PHAVU	DRBM domain-containing protein. (121 aa)
	V7CDJ5_PHAVU	Kin17_mid domain-containing protein. (399 aa)
	V7CFH8_PHAVU	Uncharacterized protein. (263 aa)

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V7ADR6_PHAVU	V7AXN3_PHAVU	V7ADR6	V7AXN3	DRBM domain-containing protein.	Uncharacterized protein.	0.605
V7ADR6_PHAVU	V7B0Y7_PHAVU	V7ADR6	V7B0Y7	DRBM domain-containing protein.	Protein-lysine N-methyltransferase PHAVU_008G009300g; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.	0.629
V7ADR6_PHAVU	V7BL11_PHAVU	V7ADR6	V7BL11	DRBM domain-containing protein.	Protein-lysine N-methyltransferase PHAVU_007G264300g; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family.	0.702
V7ADR6_PHAVU	V7BTG3_PHAVU	V7ADR6	V7BTG3	DRBM domain-containing protein.	Tr-type G domain-containing protein.	0.651
V7ADR6_PHAVU	V7BW61_PHAVU	V7ADR6	V7BW61	DRBM domain-containing protein.	Tr-type G domain-containing protein.	0.651
V7ADR6_PHAVU	V7C8K4_PHAVU	V7ADR6	V7C8K4	DRBM domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.605
V7ADR6_PHAVU	V7CQX3_PHAVU	V7ADR6	V7CQX3	DRBM domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.605
V7ADR6_PHAVU	V7CT27_PHAVU	V7ADR6	V7CT27	DRBM domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.605
V7ASN1_PHAVU	V7AXN3_PHAVU	V7ASN1	V7AXN3	Uncharacterized protein.	Uncharacterized protein.	0.605
V7ASN1_PHAVU	V7B0Y7_PHAVU	V7ASN1	V7B0Y7	Uncharacterized protein.	Protein-lysine N-methyltransferase PHAVU_008G009300g; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.	0.629
V7ASN1_PHAVU	V7BL11_PHAVU	V7ASN1	V7BL11	Uncharacterized protein.	Protein-lysine N-methyltransferase PHAVU_007G264300g; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family.	0.702
V7ASN1_PHAVU	V7BTG3_PHAVU	V7ASN1	V7BTG3	Uncharacterized protein.	Tr-type G domain-containing protein.	0.651
V7ASN1_PHAVU	V7BW61_PHAVU	V7ASN1	V7BW61	Uncharacterized protein.	Tr-type G domain-containing protein.	0.651
V7ASN1_PHAVU	V7C8K4_PHAVU	V7ASN1	V7C8K4	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.605
V7ASN1_PHAVU	V7CQX3_PHAVU	V7ASN1	V7CQX3	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.605
V7ASN1_PHAVU	V7CT27_PHAVU	V7ASN1	V7CT27	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.605
V7AXN3_PHAVU	V7ADR6_PHAVU	V7AXN3	V7ADR6	Uncharacterized protein.	DRBM domain-containing protein.	0.605
V7AXN3_PHAVU	V7ASN1_PHAVU	V7AXN3	V7ASN1	Uncharacterized protein.	Uncharacterized protein.	0.605
V7AXN3_PHAVU	V7B7T9_PHAVU	V7AXN3	V7B7T9	Uncharacterized protein.	Uncharacterized protein.	0.605
V7AXN3_PHAVU	V7BBN5_PHAVU	V7AXN3	V7BBN5	Uncharacterized protein.	Uncharacterized protein.	0.605