STRINGSTRING
gspd1 gspd1 gspG gspG PNK_0114 PNK_0114 sctJ sctJ gspd3 gspd3 PNK_0475 PNK_0475 PNK_0666 PNK_0666 PNK_0841 PNK_0841 PNK_0842 PNK_0842 PNK_0879 PNK_0879 omp85 omp85 PNK_0943 PNK_0943 PNK_1102 PNK_1102 blc blc PNK_1368 PNK_1368 PNK_1374 PNK_1374 PNK_1800 PNK_1800 PNK_1982 PNK_1982 PNK_1983 PNK_1983 mip mip pal pal PNK_2238 PNK_2238 PNK_2348 PNK_2348 PNK_2365 PNK_2365 PNK_2411 PNK_2411
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gspd1Putative general secretion pathway protein D; Belongs to the bacterial secretin family. (854 aa)
gspGGeneral secretion pathway protein G. (135 aa)
PNK_0114Conserved hypothetical protein. (216 aa)
sctJType III secretion lipoprotein SctJ. (335 aa)
gspd3Component D of type II secretion pathway; Belongs to the bacterial secretin family. (1272 aa)
PNK_0475Conserved hypothetical secreted protein. (413 aa)
PNK_0666Conserved hypothetical secreted protein. (193 aa)
PNK_0841Putative outer membrane autotransporter barrel. (544 aa)
PNK_0842Hypothetical protein. (398 aa)
PNK_0879Hypothetical protein. (598 aa)
omp85Hypothetical protein. (782 aa)
PNK_0943Conserved putative membrane protein. (724 aa)
PNK_1102Hypothetical protein. (282 aa)
blcOuter membrane lipoprotein Blc; Belongs to the calycin superfamily. Lipocalin family. (195 aa)
PNK_1368Putative outer membrane lipoprotein. (150 aa)
PNK_1374Putative type III secreted protein SctW. (117 aa)
PNK_1800Putative secreted protein. (268 aa)
PNK_1982LptE-family protein. (175 aa)
PNK_1983Conserved hypothetical protein; FOG: TPR repeat. (509 aa)
mipFKBP-type peptidyl-prolyl cis-trans isomerase. (290 aa)
palPeptidoglycan-associated lipoprotein precursor; Belongs to the Pal lipoprotein family. (260 aa)
PNK_2238Hypothetical protein. (205 aa)
PNK_2348Conserved hypothetical protein. (205 aa)
PNK_2365Conserved hypothetical protein. (421 aa)
PNK_2411Putative secreted protein. (458 aa)
Your Current Organism:
Protochlamydia naegleriophila
NCBI taxonomy Id: 389348
Other names: C. Protochlamydia naegleriophila, Candidatus Protochlamydia naegleriophila, strain KNic
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