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Tpet_1220 Tpet_1220 Tpet_1222 Tpet_1222 trmD trmD rimM rimM Tpet_1225 Tpet_1225 Tpet_1229 Tpet_1229 Tpet_1230 Tpet_1230 Tpet_1234 Tpet_1234 Tpet_1235 Tpet_1235 Tpet_1236 Tpet_1236 Tpet_1237 Tpet_1237 Tpet_1238 Tpet_1238 Tpet_1239 Tpet_1239 Tpet_1242 Tpet_1242
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tpet_1220TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S26 family. (306 aa)
Tpet_1222Uncharacterized protein-like protein. (192 aa)
trmDtRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (245 aa)
rimM16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (176 aa)
Tpet_1225RNA-binding protein (contains KH domain)-like protein; Belongs to the UPF0109 family. (75 aa)
Tpet_1229PFAM: MscS Mechanosensitive ion channel. (268 aa)
Tpet_1230Hypothetical protein. (266 aa)
Tpet_1234TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region. (175 aa)
Tpet_1235PFAM: helix-hairpin-helix motif; DNA repair protein RadC; Belongs to the UPF0758 family. (222 aa)
Tpet_1236Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. (204 aa)
Tpet_1237PFAM: Heptaprenyl diphosphate synthase component I. (181 aa)
Tpet_1238PFAM: protein of unknown function DUF1312. (116 aa)
Tpet_1239ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. (349 aa)
Tpet_1242PFAM: protein of unknown function DUF1385. (296 aa)
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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