STRINGSTRING
Smal_0917 Smal_0917 Smal_1130 Smal_1130 Smal_1131 Smal_1131 Smal_1132 Smal_1132 Smal_1133 Smal_1133 Smal_1134 Smal_1134 Smal_1490 Smal_1490 Smal_1491 Smal_1491 Smal_1501 Smal_1501 Smal_2015 Smal_2015 Smal_2016 Smal_2016 Smal_2017 Smal_2017 Smal_2018 Smal_2018 Smal_2129 Smal_2129 Smal_2143 Smal_2143 Smal_2144 Smal_2144 Smal_2145 Smal_2145 Smal_2161 Smal_2161 Smal_2184 Smal_2184 Smal_2185 Smal_2185 Smal_2186 Smal_2186 Smal_2187 Smal_2187 Smal_2188 Smal_2188 Smal_2218 Smal_2218 Smal_2219 Smal_2219 Smal_2220 Smal_2220 Smal_2301 Smal_2301 Smal_2302 Smal_2302 Smal_2303 Smal_2303 Smal_2387 Smal_2387 Smal_2388 Smal_2388 Smal_2389 Smal_2389 Smal_2390 Smal_2390 Smal_2391 Smal_2391 Smal_3314 Smal_3314 Smal_3315 Smal_3315 Smal_3316 Smal_3316 Smal_3692 Smal_3692
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smal_0917TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_3560 TonB-dependent siderophore receptor. (696 aa)
Smal_1130KEGG: fjo:Fjoh_3948 hypothetical protein. (235 aa)
Smal_1131KEGG: fjo:Fjoh_3949 hypothetical protein. (318 aa)
Smal_1132PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbl:Sbal_0680 TonB-dependent receptor. (930 aa)
Smal_1133anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: psp:PSPPH_2117 FecR protein superfamily. (322 aa)
Smal_1134RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4331 sigma-70 factor, ECF subfamily. (175 aa)
Smal_1490RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor. (171 aa)
Smal_1491anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor. (340 aa)
Smal_1501TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_33680 ferripyoverdine receptor. (732 aa)
Smal_2015PFAM: PepSY-associated TM helix domain protein; KEGG: xcb:XC_0559 hypothetical protein. (627 aa)
Smal_2016TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1927 Ton-B dependent siderophore receptor, putative. (821 aa)
Smal_2017anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor. (345 aa)
Smal_2018RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_47400 putative sigma-70 factor, ECF subfamily. (228 aa)
Smal_2129TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2492 TonB-dependent siderophore receptor BauA. (722 aa)
Smal_2143RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pae:PA1363 probable sigma-70 factor, ECF subfamily. (174 aa)
Smal_2144anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pae:PA1364 probable transmembrane sensor. (283 aa)
Smal_2145PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: hch:HCH_03460 outer membrane receptor protein, mostly Fe transport. (809 aa)
Smal_2161PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_5246 TonB-dependent receptor. (729 aa)
Smal_2184KEGG: ppg:PputGB1_1525 conserved hypothetical protein; putative peptide signal. (484 aa)
Smal_2185KEGG: mmw:Mmwyl1_4302 hypothetical protein. (254 aa)
Smal_2186PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mmw:Mmwyl1_4301 TonB-dependent receptor. (1040 aa)
Smal_2187anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein. (318 aa)
Smal_2188RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily. (167 aa)
Smal_2218KEGG: mms:mma_2362 Fe2+-dicitrate sensor, membrane component. (326 aa)
Smal_2219RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2370 RNA polymerase sigma-70 factor, ECF subfamily. (176 aa)
Smal_2220PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein. (226 aa)
Smal_2301RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_4176 probable sigma-70 factor, ECF subfamily. (174 aa)
Smal_2302anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_1234 Fe2+-dicitrate sensor, membrane component. (314 aa)
Smal_2303PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2365 HasR. (982 aa)
Smal_2387RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_19990 putative sigma-70 factor, ECF subfamily. (169 aa)
Smal_2388anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: nwi:Nwi_3044 FecR protein. (308 aa)
Smal_2389PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: sbc:SbBS512_A0115 TonB-dependent receptor. (823 aa)
Smal_2390PFAM: protein of unknown function DUF399; KEGG: cko:CKO_00039 hypothetical protein. (266 aa)
Smal_2391TIGRFAM: TonB family protein; KEGG: pfo:PflO1_5557 TonB-like. (237 aa)
Smal_3314PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pau:PA14_64710 putative extracellular heme-binding protein. (973 aa)
Smal_3315anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor. (312 aa)
Smal_3316RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mrd:Mrad2831_6088 RNA polymerase, sigma-24 subunit, ECF subfamily. (166 aa)
Smal_3692TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aci:ACIAD1163 putative ferric siderophore receptor protein. (685 aa)
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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