(10 nodes) FecR, N-terminal, and Sigma-70, region 4 network (Stenotrophomonas maltophilia R5513)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

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textmining

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Your Input:
	Smal_1490	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor. (171 aa)
	Smal_1491	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor. (340 aa)
	Smal_2187	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein. (318 aa)
	Smal_2188	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily. (167 aa)
	Smal_2218	KEGG: mms:mma_2362 Fe2+-dicitrate sensor, membrane component. (326 aa)
	Smal_2219	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2370 RNA polymerase sigma-70 factor, ECF subfamily. (176 aa)
	Smal_2220	PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein. (226 aa)
	Smal_2301	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_4176 probable sigma-70 factor, ECF subfamily. (174 aa)
	Smal_2302	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_1234 Fe2+-dicitrate sensor, membrane component. (314 aa)
	Smal_2303	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2365 HasR. (982 aa)

Your Current Organism:

Stenotrophomonas maltophilia R5513

NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Smal_1490	Smal_1491	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor.	0.953
Smal_1490	Smal_2187	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein.	0.803
Smal_1490	Smal_2188	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily.	0.766
Smal_1490	Smal_2218	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	KEGG: mms:mma_2362 Fe2+-dicitrate sensor, membrane component.	0.810
Smal_1490	Smal_2219	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2370 RNA polymerase sigma-70 factor, ECF subfamily.	0.762
Smal_1490	Smal_2220	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein.	0.606
Smal_1490	Smal_2301	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_4176 probable sigma-70 factor, ECF subfamily.	0.760
Smal_1490	Smal_2302	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_1234 Fe2+-dicitrate sensor, membrane component.	0.816
Smal_1490	Smal_2303	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2365 HasR.	0.557
Smal_1491	Smal_1490	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	0.953
Smal_1491	Smal_2188	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily.	0.811
Smal_1491	Smal_2218	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor.	KEGG: mms:mma_2362 Fe2+-dicitrate sensor, membrane component.	0.774
Smal_1491	Smal_2219	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2370 RNA polymerase sigma-70 factor, ECF subfamily.	0.803
Smal_1491	Smal_2220	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor.	PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein.	0.637
Smal_1491	Smal_2301	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_4176 probable sigma-70 factor, ECF subfamily.	0.807
Smal_1491	Smal_2303	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor.	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2365 HasR.	0.618
Smal_2187	Smal_1490	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor.	0.803
Smal_2187	Smal_2188	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily.	0.910
Smal_2187	Smal_2219	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2370 RNA polymerase sigma-70 factor, ECF subfamily.	0.805
Smal_2187	Smal_2220	anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein.	PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein.	0.697

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