STRINGSTRING
Smal_2187 Smal_2187 Smal_2188 Smal_2188 Smal_2301 Smal_2301 Smal_2302 Smal_2302 Smal_2303 Smal_2303
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smal_2187anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein. (318 aa)
Smal_2188RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily. (167 aa)
Smal_2301RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_4176 probable sigma-70 factor, ECF subfamily. (174 aa)
Smal_2302anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_1234 Fe2+-dicitrate sensor, membrane component. (314 aa)
Smal_2303PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2365 HasR. (982 aa)
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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