STRINGSTRING
Sare_0132 Sare_0132 Sare_0410 Sare_0410 Sare_0411 Sare_0411 Sare_0412 Sare_0412 Sare_1553 Sare_1553 Sare_2350 Sare_2350 Sare_2351 Sare_2351
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_0132PFAM: SNARE associated Golgi protein; KEGG: stp:Strop_0127 uncharacterized membrane-associated protein-like protein. (237 aa)
Sare_0410TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: kra:Krad_1868 efflux transporter, RND family, MFP subunit. (476 aa)
Sare_0411PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kra:Krad_1869 ABC transporter-related protein. (287 aa)
Sare_0412PFAM: protein of unknown function DUF214; KEGG: kra:Krad_1870 protein of unknown function DUF214. (394 aa)
Sare_1553KEGG: stp:Strop_1593 hypothetical protein. (357 aa)
Sare_2350PFAM: protein of unknown function DUF214; KEGG: stp:Strop_2233 protein of unknown function DUF214. (849 aa)
Sare_2351PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_2234 ABC transporter related. (255 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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