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Sare_0002 Sare_0002 Sare_0252 Sare_0252 Sare_0323 Sare_0323 Sare_0447 Sare_0447 Sare_0479 Sare_0479 Sare_1784 Sare_1784 priA priA Sare_1924 Sare_1924 Sare_2250 Sare_2250 Sare_2375 Sare_2375 Sare_3336 Sare_3336 polA polA Sare_3518 Sare_3518 dnaG dnaG Sare_3846 Sare_3846 Sare_3930 Sare_3930 Sare_4120 Sare_4120 Sare_4341 Sare_4341 Sare_4398 Sare_4398 Sare_4403 Sare_4403 topA topA Sare_5064 Sare_5064 Sare_5067 Sare_5067
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
Sare_0002DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (377 aa)
Sare_0252KEGG: stp:Strop_0213 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase. (834 aa)
Sare_0323SMART: helicase c2; KEGG: stp:Strop_0280 helicase C2. (699 aa)
Sare_0447KEGG: stp:Strop_0376 ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases. (708 aa)
Sare_0479Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; DNA polymerase III beta chain; KEGG: sco:SCO1180 DNA polymerase III beta chain. (354 aa)
Sare_1784KEGG: stp:Strop_1798 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein. (1177 aa)
priAConserved hypothetical protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (625 aa)
Sare_1924KEGG: pna:Pnap_0963 hypothetical protein. (616 aa)
Sare_2250PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: stp:Strop_2106 DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. (574 aa)
Sare_2375PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: stp:Strop_2257 5'-3' exonuclease. (353 aa)
Sare_3336KEGG: stp:Strop_3105 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases. (616 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (899 aa)
Sare_3518KEGG: stp:Strop_3286 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease. (585 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (627 aa)
Sare_3846TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: stp:Strop_3467 DNA polymerase III, delta subunit. (326 aa)
Sare_3930TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: stp:Strop_3556 single-strand binding protein. (240 aa)
Sare_4120PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: stp:Strop_3739 UvrD/REP helicase. (719 aa)
Sare_4341PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: stp:Strop_3950 helicase domain protein. (559 aa)
Sare_4398KEGG: stp:Strop_4017 hypothetical protein. (608 aa)
Sare_4403KEGG: stp:Strop_4022 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit; SMART: AAA ATPase. (424 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (949 aa)
Sare_5064Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (844 aa)
Sare_5067TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: stp:Strop_4555 single-strand binding protein. (167 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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