STRINGSTRING
Sare_0287 Sare_0287 Sare_0462 Sare_0462 Sare_0633 Sare_0633 Sare_0635 Sare_0635 Sare_1699 Sare_1699 Sare_3506 Sare_3506 Sare_4775 Sare_4775
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_0287PFAM: ROK family protein; KEGG: stp:Strop_0246 ROK family protein. (320 aa)
Sare_0462PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: stp:Strop_0391 alcohol dehydrogenase GroES domain protein. (348 aa)
Sare_0633Gluconolactonase; PFAM: NHL repeat containing protein; SMP-30/Gluconolaconase/LRE domain protein; KEGG: stp:Strop_0658 gluconolactonase. (307 aa)
Sare_0635PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0661 short-chain dehydrogenase/reductase SDR. (259 aa)
Sare_1699TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: stp:Strop_1701 phosphoglucomutase, alpha-D-glucose phosphate-specific. (551 aa)
Sare_3506TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; KEGG: stp:Strop_3274 putative glucokinase, ROK family. (315 aa)
Sare_4775PFAM: ROK family protein; KEGG: stp:Strop_4333 ROK family protein. (321 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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