STRINGSTRING
Sare_3052 Sare_3052 Sare_3053 Sare_3053 Sare_3055 Sare_3055 Sare_3059 Sare_3059 Sare_3060 Sare_3060
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_3052TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV1250 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. (524 aa)
Sare_3053KEGG: stp:Strop_0686 hypothetical protein. (282 aa)
Sare_3055PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_0684 acyl-CoA dehydrogenase domain protein. (363 aa)
Sare_3059PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_0680 AMP-dependent synthetase and ligase. (491 aa)
Sare_3060KEGG: stp:Strop_0679 hypothetical protein. (371 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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