STRINGSTRING
Sare_1040 Sare_1040 Sare_2221 Sare_2221 Sare_2560 Sare_2560 Sare_2808 Sare_2808 Sare_2809 Sare_2809 Sare_2838 Sare_2838
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_1040PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_1174 AMP-dependent synthetase and ligase. (597 aa)
Sare_2221PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_2082 AMP-dependent synthetase and ligase. (562 aa)
Sare_2560PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_2411 AMP-dependent synthetase and ligase. (632 aa)
Sare_2808PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2609 acyl-CoA dehydrogenase domain protein. (401 aa)
Sare_2809PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_2610 acyl-CoA dehydrogenase domain protein. (367 aa)
Sare_2838PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_2641 AMP-dependent synthetase and ligase. (515 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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