STRINGSTRING
Sare_0196 Sare_0196 Sare_1041 Sare_1041 Sare_1042 Sare_1042 Sare_1043 Sare_1043 Sare_1044 Sare_1044 Sare_1045 Sare_1045 Sare_1047 Sare_1047 Sare_1048 Sare_1048 Sare_1050 Sare_1050 Sare_1052 Sare_1052 Sare_1053 Sare_1053 Sare_1055 Sare_1055 Sare_1057 Sare_1057 Sare_1058 Sare_1058
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_0196PFAM: Carboxymuconolactone decarboxylase; KEGG: stp:Strop_0181 carboxymuconolactone decarboxylase. (109 aa)
Sare_1041PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_3270 GCN5-related N-acetyltransferase. (196 aa)
Sare_1042KEGG: fra:Francci3_3271 hypothetical protein. (88 aa)
Sare_1043PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_3272 AMP-dependent synthetase and ligase. (504 aa)
Sare_1044Methionine--tRNA ligase; PFAM: Cupin 2 conserved barrel domain protein; tRNA synthetase class I (M); KEGG: fra:Francci3_3273 cupin 2; Belongs to the class-I aminoacyl-tRNA synthetase family. (671 aa)
Sare_1045PFAM: FAD dependent oxidoreductase; KEGG: fra:Francci3_3274 FAD dependent oxidoreductase. (358 aa)
Sare_1047PFAM: Saccharopine dehydrogenase; KEGG: sma:SAV1787 saccharopine dehydrogenase. (411 aa)
Sare_1048PFAM: alanine dehydrogenase/PNT domain protein; KEGG: sma:SAV1788 saccharopine dehydrogenase. (359 aa)
Sare_1050Conserved hypothetical protein; KEGG: aor:AO090038000030 predicted protein Pfam: DAO. (618 aa)
Sare_1052PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa30920 putative oxidoreductase. (397 aa)
Sare_1053All-trans-retinol 13,14-reductase; PFAM: Rab GTPase activator; FAD dependent oxidoreductase; KEGG: nfa:nfa30910 hypothetical protein. (501 aa)
Sare_1055PFAM: fumarate lyase; KEGG: sma:SAV1705 putative 3-carboxy-cis,cis-muconate cycloisomerase. (488 aa)
Sare_1057PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: fra:Francci3_3269 peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase. (358 aa)
Sare_1058PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: ppu:PP_3787 hypothetical protein. (308 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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