STRINGSTRING
Sare_0028 Sare_0028 Sare_0340 Sare_0340 Sare_0454 Sare_0454 Sare_0630 Sare_0630 Sare_0736 Sare_0736 Sare_0737 Sare_0737 Sare_0738 Sare_0738 Sare_0855 Sare_0855 Sare_0863 Sare_0863 ahcY ahcY Sare_1106 Sare_1106 mnmA mnmA Sare_1108 Sare_1108 Sare_1158 Sare_1158 Sare_1421 Sare_1421 Sare_1736 Sare_1736 Sare_1771 Sare_1771 metK metK Sare_1925 Sare_1925 Sare_2059 Sare_2059 Sare_2245 Sare_2245 Sare_2325 Sare_2325 Sare_2784 Sare_2784 Sare_2891 Sare_2891 Sare_2956 Sare_2956 Sare_3477 Sare_3477 Sare_3533 Sare_3533 Sare_3534 Sare_3534 Sare_4082 Sare_4082 Sare_4083 Sare_4083 Sare_4084 Sare_4084 Sare_4085 Sare_4085 Sare_4172 Sare_4172 Sare_4509 Sare_4509
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_0028PFAM: Rhodanese domain protein; KEGG: kra:Krad_3079 rhodanese domain protein. (297 aa)
Sare_0340PFAM: Rhodanese domain protein; KEGG: stp:Strop_0296 rhodanese domain protein. (282 aa)
Sare_0454PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: stp:Strop_0383 UBA/ThiF-type NAD/FAD binding protein. (393 aa)
Sare_0630Quorum-sensing autoinducer 2 (AI-2), LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (165 aa)
Sare_0736PFAM: inositol monophosphatase; KEGG: stp:Strop_0792 inositol monophosphatase. (277 aa)
Sare_0737KEGG: stp:Strop_0793 sulfate adenylyltransferase, small subunit; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase. (303 aa)
Sare_0738Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (435 aa)
Sare_0855TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: stp:Strop_0912 cystathionine beta-synthase. (456 aa)
Sare_0863Cystathionine gamma-synthase; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: stp:Strop_0920 cystathionine gamma-synthase. (380 aa)
ahcYAdenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. (496 aa)
Sare_1106PFAM: aminotransferase class V; KEGG: stp:Strop_1213 aminotransferase, class V. (391 aa)
mnmAtRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (360 aa)
Sare_1108PFAM: Methionine synthase vitamin-B12 independent; KEGG: stp:Strop_1215 methionine synthase, vitamin-B12 independent. (335 aa)
Sare_1158PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: stp:Strop_1267 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme. (373 aa)
Sare_1421PFAM: Rhodanese domain protein; KEGG: stp:Strop_1460 rhodanese domain protein. (288 aa)
Sare_1736KEGG: stp:Strop_0966 adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; S-adenosyl-L-homocysteine hydrolase, NAD binding. (496 aa)
Sare_1771PFAM: histidine triad (HIT) protein; KEGG: stp:Strop_1784 histidine triad (HIT) protein. (182 aa)
metKMethionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (399 aa)
Sare_1925KEGG: stp:Strop_0061 C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (98 aa)
Sare_2059PFAM: purine or other phosphorylase family 1; KEGG: stp:Strop_4371 purine or other phosphorylase, family 1. (384 aa)
Sare_2245PFAM: DoxX family protein; KEGG: stp:Strop_2102 DoxX family protein. (188 aa)
Sare_2325Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1171 aa)
Sare_2784PFAM: aminotransferase class I and II; KEGG: stp:Strop_2586 aminotransferase, class I and II. (421 aa)
Sare_2891PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_1961 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (401 aa)
Sare_2956TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: tfu:Tfu_0438 cystathionine beta-synthase. (465 aa)
Sare_3477KEGG: stp:Strop_3250 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (305 aa)
Sare_3533Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: stp:Strop_3301 aminotransferase, class V. (383 aa)
Sare_3534PFAM: SirA family protein; KEGG: stp:Strop_3302 SirA family protein; Belongs to the sulfur carrier protein TusA family. (76 aa)
Sare_4082PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: stp:Strop_3702 cobalamin (vitamin B12) biosynthesis CbiX protein. (250 aa)
Sare_4083Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (251 aa)
Sare_4084KEGG: sma:SAV2128 hypothetical protein. (52 aa)
Sare_4085PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: stp:Strop_3704 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein. (569 aa)
Sare_4172PFAM: adenylylsulfate kinase; KEGG: stp:Strop_3792 adenylylsulfate kinase. (508 aa)
Sare_4509PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: stp:Strop_4089 pyridoxal-5'-phosphate-dependent enzyme, beta subunit. (363 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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