STRINGSTRING
Sare_1006 Sare_1006 Sare_1007 Sare_1007 Sare_1008 Sare_1008 Sare_1009 Sare_1009 Sare_2790 Sare_2790 Sare_2791 Sare_2791 cbiN cbiN cbiM cbiM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_1006PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: stp:Strop_1116 cobalamin (vitamin B12) biosynthesis CbiM protein. (238 aa)
Sare_1007KEGG: stp:Strop_1117 hypothetical protein. (130 aa)
Sare_1008TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: stp:Strop_1118 cobalt ABC transporter, inner membrane subunit CbiQ. (256 aa)
Sare_1009Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. (253 aa)
Sare_2790Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. (305 aa)
Sare_2791TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: stp:Strop_2593 cobalt ABC transporter, inner membrane subunit CbiQ. (247 aa)
cbiNCobalt transport protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family. (105 aa)
cbiMCobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. (226 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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