STRINGSTRING
Sare_4509 Sare_4509 Sare_4585 Sare_4585 Sare_2956 Sare_2956 Sare_1692 Sare_1692 Sare_0991 Sare_0991 Sare_0990 Sare_0990 Sare_0989 Sare_0989 Sare_0855 Sare_0855 Sare_0454 Sare_0454 Sare_0384 Sare_0384 Sare_0366 Sare_0366
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_4509PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: stp:Strop_4089 pyridoxal-5'-phosphate-dependent enzyme, beta subunit. (363 aa)
Sare_4585PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: stp:Strop_2310 pyridoxal-5'-phosphate-dependent enzyme, beta subunit. (335 aa)
Sare_2956TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: tfu:Tfu_0438 cystathionine beta-synthase. (465 aa)
Sare_1692KEGG: stp:Strop_1694 hypothetical protein. (182 aa)
Sare_0991TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: stp:Strop_1102 cysteine synthase. (337 aa)
Sare_0990PFAM: thiamineS protein; KEGG: stp:Strop_1101 thiamineS protein. (112 aa)
Sare_0989PFAM: Mov34/MPN/PAD-1 family protein; KEGG: stp:Strop_1100 Mov34/MPN/PAD-1 family protein. (162 aa)
Sare_0855TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: stp:Strop_0912 cystathionine beta-synthase. (456 aa)
Sare_0454PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: stp:Strop_0383 UBA/ThiF-type NAD/FAD binding protein. (393 aa)
Sare_0384PFAM: protein of unknown function DUF540; KEGG: stp:Strop_0322 protein of unknown function DUF540. (280 aa)
Sare_0366Cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sma:SAV3648 putative cystathionine beta-synthase. (340 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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