STRINGSTRING
Sare_3902 Sare_3902 Sare_4686 Sare_4686 Sare_1147 Sare_1147 Sare_4569 Sare_4569
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_3902PFAM: Hydratase/decarboxylase; KEGG: stp:Strop_3527 4-oxalocrotonate decarboxylase. (265 aa)
Sare_4686Fumarylacetoacetase; KEGG: stp:Strop_4256 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969. (398 aa)
Sare_1147PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: stp:Strop_1256 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase. (256 aa)
Sare_4569PFAM: Hydratase/decarboxylase; KEGG: bca:BCE_2155 2-hydroxypenta-2,4-dienoate hydratase, putative. (264 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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