STRINGSTRING
Sare_0148 Sare_0148 Sare_0172 Sare_0172 Sare_0196 Sare_0196 Sare_0382 Sare_0382 Sare_0517 Sare_0517 Sare_0851 Sare_0851 Sare_1055 Sare_1055 Sare_1308 Sare_1308 Sare_1316 Sare_1316 Sare_1469 Sare_1469 Sare_2803 Sare_2803 Sare_2807 Sare_2807 Sare_2812 Sare_2812 Sare_2815 Sare_2815 Sare_2837 Sare_2837 Sare_2841 Sare_2841 Sare_3899 Sare_3899 Sare_3900 Sare_3900 Sare_3901 Sare_3901 Sare_3902 Sare_3902 Sare_3903 Sare_3903 Sare_3991 Sare_3991 Sare_4000 Sare_4000 Sare_4006 Sare_4006 Sare_4566 Sare_4566 Sare_4567 Sare_4567 Sare_4569 Sare_4569 Sare_4961 Sare_4961 Sare_4992 Sare_4992
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_0148TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: stp:Strop_0142 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (430 aa)
Sare_0172PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: stp:Strop_0163 3-hydroxybutyryl-CoA dehydrogenase. (285 aa)
Sare_0196PFAM: Carboxymuconolactone decarboxylase; KEGG: stp:Strop_0181 carboxymuconolactone decarboxylase. (109 aa)
Sare_0382PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_0319 alpha/beta hydrolase fold. (301 aa)
Sare_0517PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_0429 acyl-CoA dehydrogenase domain protein. (386 aa)
Sare_0851KEGG: stp:Strop_0908 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (420 aa)
Sare_1055PFAM: fumarate lyase; KEGG: sma:SAV1705 putative 3-carboxy-cis,cis-muconate cycloisomerase. (488 aa)
Sare_1308PFAM: 4-oxalocrotonate tautomerase; KEGG: stp:Strop_2370 4-oxalocrotonate tautomerase. (70 aa)
Sare_1316KEGG: stp:Strop_1359 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
Sare_1469KEGG: stp:Strop_1527 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (398 aa)
Sare_2803PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_2604 enoyl-CoA hydratase/isomerase. (248 aa)
Sare_2807KEGG: stp:Strop_2608 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (377 aa)
Sare_2812KEGG: stp:Strop_2613 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (387 aa)
Sare_2815PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_2616 enoyl-CoA hydratase/isomerase. (281 aa)
Sare_2837PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_2640 enoyl-CoA hydratase/isomerase. (264 aa)
Sare_2841KEGG: stp:Strop_2644 propanoyl-CoA C-acyltransferase. (392 aa)
Sare_3899PFAM: Hydratase/decarboxylase; KEGG: stp:Strop_3524 4-oxalocrotonate decarboxylase. (257 aa)
Sare_3900Pyruvate carboxyltransferase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (351 aa)
Sare_3901Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (308 aa)
Sare_3902PFAM: Hydratase/decarboxylase; KEGG: stp:Strop_3527 4-oxalocrotonate decarboxylase. (265 aa)
Sare_3903PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_3528 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (493 aa)
Sare_3991KEGG: stp:Strop_3610 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (399 aa)
Sare_4000PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: stp:Strop_3618 3-hydroxybutyryl-CoA dehydrogenase. (595 aa)
Sare_4006PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: stp:Strop_3624 3-hydroxybutyryl-CoA dehydrogenase. (282 aa)
Sare_4566Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (295 aa)
Sare_4567Pyruvate carboxyltransferase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (348 aa)
Sare_4569PFAM: Hydratase/decarboxylase; KEGG: bca:BCE_2155 2-hydroxypenta-2,4-dienoate hydratase, putative. (264 aa)
Sare_4961PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_4447 hypothetical protein. (253 aa)
Sare_4992KEGG: stp:Strop_4479 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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