STRINGSTRING
Sare_0032 Sare_0032 Sare_0148 Sare_0148 Sare_0172 Sare_0172 Sare_0645 Sare_0645 Sare_0646 Sare_0646 Sare_0851 Sare_0851 Sare_0879 Sare_0879 Sare_1100 Sare_1100 Sare_1123 Sare_1123 Sare_1124 Sare_1124 Sare_1316 Sare_1316 Sare_1705 Sare_1705 Sare_1706 Sare_1706 Sare_1707 Sare_1707 Sare_1725 Sare_1725 Sare_1797 Sare_1797 Sare_2067 Sare_2067 Sare_2341 Sare_2341 Sare_2803 Sare_2803 Sare_2804 Sare_2804 Sare_2807 Sare_2807 Sare_2812 Sare_2812 Sare_2815 Sare_2815 Sare_2837 Sare_2837 Sare_2841 Sare_2841 Sare_2955 Sare_2955 Sare_3215 Sare_3215 Sare_3901 Sare_3901 Sare_3991 Sare_3991 Sare_3994 Sare_3994 Sare_4000 Sare_4000 Sare_4006 Sare_4006 Sare_4150 Sare_4150 Sare_4151 Sare_4151 Sare_4566 Sare_4566 Sare_4961 Sare_4961
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_0032PFAM: pyruvate carboxyltransferase; KEGG: stp:Strop_0026 pyruvate carboxyltransferase. (303 aa)
Sare_0148TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: stp:Strop_0142 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (430 aa)
Sare_0172PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: stp:Strop_0163 3-hydroxybutyryl-CoA dehydrogenase. (285 aa)
Sare_0645PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: stp:Strop_0698 thiamine pyrophosphate enzyme domain protein TPP-binding. (344 aa)
Sare_0646PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: stp:Strop_0699 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (615 aa)
Sare_0851KEGG: stp:Strop_0908 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (420 aa)
Sare_0879TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_0937 acetoacetyl-CoA synthase. (664 aa)
Sare_1100PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: stp:Strop_1207 thiamine pyrophosphate enzyme domain protein TPP-binding; Belongs to the TPP enzyme family. (540 aa)
Sare_1123TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: stp:Strop_1233 acetolactate synthase, large subunit, biosynthetic type. (629 aa)
Sare_1124TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: stp:Strop_1234 acetolactate synthase, small subunit. (171 aa)
Sare_1316KEGG: stp:Strop_1359 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
Sare_1705TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stp:Strop_1708 succinate dehydrogenase and fumarate reductase iron-sulfur protein. (251 aa)
Sare_1706KEGG: stp:Strop_1709 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (643 aa)
Sare_1707TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: stp:Strop_1710 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. (230 aa)
Sare_1725PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_1742 aldehyde dehydrogenase. (471 aa)
Sare_1797TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_1807 3-hydroxybutyrate dehydrogenase. (260 aa)
Sare_2067PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sma:SAV1372 acetolactate synthase; Belongs to the TPP enzyme family. (568 aa)
Sare_2341TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: stp:Strop_4374 glutamate decarboxylase; Belongs to the group II decarboxylase family. (466 aa)
Sare_2803PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_2604 enoyl-CoA hydratase/isomerase. (248 aa)
Sare_2804PFAM: coenzyme A transferase; KEGG: stp:Strop_2605 coenzyme A transferase. (280 aa)
Sare_2807KEGG: stp:Strop_2608 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (377 aa)
Sare_2812KEGG: stp:Strop_2613 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (387 aa)
Sare_2815PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_2616 enoyl-CoA hydratase/isomerase. (281 aa)
Sare_2837PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_2640 enoyl-CoA hydratase/isomerase. (264 aa)
Sare_2841KEGG: stp:Strop_2644 propanoyl-CoA C-acyltransferase. (392 aa)
Sare_2955PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbr:BB0923 putative acetolactate synthase large subunit; Belongs to the TPP enzyme family. (565 aa)
Sare_3215PFAM: aminotransferase class-III; KEGG: stp:Strop_2993 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (436 aa)
Sare_3901Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (308 aa)
Sare_3991KEGG: stp:Strop_3610 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (399 aa)
Sare_3994TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: stp:Strop_3612 crotonyl-CoA reductase. (451 aa)
Sare_4000PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: stp:Strop_3618 3-hydroxybutyryl-CoA dehydrogenase. (595 aa)
Sare_4006PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: stp:Strop_3624 3-hydroxybutyryl-CoA dehydrogenase. (282 aa)
Sare_4150PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: stp:Strop_3768 succinate dehydrogenase. (637 aa)
Sare_4151TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: stp:Strop_3769 succinate dehydrogenase and fumarate reductase iron-sulfur protein. (366 aa)
Sare_4566Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (295 aa)
Sare_4961PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_4447 hypothetical protein. (253 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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