STRINGSTRING
Sare_0147 Sare_0147 Sare_0295 Sare_0295 Sare_0445 Sare_0445 Sare_0671 Sare_0671 Sare_0803 Sare_0803 Sare_1065 Sare_1065 Sare_1306 Sare_1306 bioB bioB Sare_1519 Sare_1519 bioD bioD bioA bioA Sare_2674 Sare_2674 Sare_2677 Sare_2677 Sare_2813 Sare_2813 Sare_2959 Sare_2959 Sare_3217 Sare_3217 Sare_3297 Sare_3297 Sare_3623 Sare_3623 Sare_4049 Sare_4049
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_0147PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0141 short-chain dehydrogenase/reductase SDR. (451 aa)
Sare_0295PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR domain protein; KEGG: stp:Strop_2373 short-chain dehydrogenase/reductase SDR. (247 aa)
Sare_0445PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0374 short-chain dehydrogenase/reductase SDR. (248 aa)
Sare_0671PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_0725 short-chain dehydrogenase/reductase SDR. (251 aa)
Sare_0803KEGG: stp:Strop_0857 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase. (291 aa)
Sare_1065PFAM: Beta-ketoacyl synthase; KEGG: stp:Strop_2494 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (382 aa)
Sare_1306PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: stp:Strop_2373 short-chain dehydrogenase/reductase SDR. (250 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (331 aa)
Sare_15198-amino-7-oxononanoate synthase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: stp:Strop_1570 8-amino-7-oxononanoate synthase. (378 aa)
bioDDethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (234 aa)
bioAAdenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (425 aa)
Sare_2674PFAM: Beta-ketoacyl synthase; KEGG: stp:Strop_2491 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (409 aa)
Sare_2677PFAM: Beta-ketoacyl synthase; KEGG: stp:Strop_2494 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (360 aa)
Sare_2813PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_2614 short-chain dehydrogenase/reductase SDR. (264 aa)
Sare_2959PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0374 short-chain dehydrogenase/reductase SDR. (247 aa)
Sare_3217PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_2998 short-chain dehydrogenase/reductase SDR. (247 aa)
Sare_3297PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_3070 short-chain dehydrogenase/reductase SDR. (253 aa)
Sare_3623Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (408 aa)
Sare_4049PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_3673 short-chain dehydrogenase/reductase SDR. (251 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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