STRINGSTRING
Bphy_5278 Bphy_5278 Bphy_0198 Bphy_0198 Bphy_0264 Bphy_0264 Bphy_0386 Bphy_0386 Bphy_0388 Bphy_0388 clpP clpP Bphy_0757 Bphy_0757 Bphy_0822 Bphy_0822 clpP-2 clpP-2 Bphy_1028 Bphy_1028 accA accA Bphy_1540 Bphy_1540 Bphy_1652 Bphy_1652 Bphy_1885 Bphy_1885 Bphy_1984 Bphy_1984 Bphy_2431 Bphy_2431 Bphy_2688 Bphy_2688 Bphy_2691 Bphy_2691 Bphy_3179 Bphy_3179 Bphy_3560 Bphy_3560 Bphy_3561 Bphy_3561 Bphy_4071 Bphy_4071 accD accD Bphy_4841 Bphy_4841 Bphy_4887 Bphy_4887 Bphy_5083 Bphy_5083 Bphy_5084 Bphy_5084 Bphy_5124 Bphy_5124 Bphy_5130 Bphy_5130 Bphy_5131 Bphy_5131
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Bphy_5278PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B1151 hypothetical protein. (292 aa)
Bphy_0198PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A4233 putative enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (286 aa)
Bphy_0264Carboxyl-terminal protease; KEGG: bxe:Bxe_A4182 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family. (530 aa)
Bphy_0386PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bxe:Bxe_A4037 putative 3-hydroxyacyl-CoA dehydrogenase. (814 aa)
Bphy_0388PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A4035 putative enoyl-CoA hydratase/isomerase. (254 aa)
clpPATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (217 aa)
Bphy_0757PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0993 enoyl-CoA hydratase/isomerase family protein. (269 aa)
Bphy_0822PFAM: peptidase S49; KEGG: bxe:Bxe_A1066 family S49 unassigned peptidase. (336 aa)
clpP-2ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (219 aa)
Bphy_1028PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bxe:Bxe_A2274 3-hydroxyacyl-CoA dehydrogenase. (694 aa)
accAacetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (323 aa)
Bphy_1540TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A1422 benzoyl-CoA-dihydrodiol lyase (BoxC). (560 aa)
Bphy_1652PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A2495 putative enoyl(3-hydroxyisobutyryl)-coenzyme A hydratase/isomerase. (376 aa)
Bphy_1885PFAM: peptidase S49; KEGG: bxe:Bxe_A3063 putative head-tail preconnector protein GP5. (292 aa)
Bphy_1984PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A3185 putative enoyl-CoA hydratase, PaaB-like; Belongs to the enoyl-CoA hydratase/isomerase family. (262 aa)
Bphy_2431PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A3896 putative enoyl-CoA hydratase/isomerase. (292 aa)
Bphy_2688PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0471 putative enoyl-CoA hydratase I (PaaF); Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
Bphy_2691TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0468 putative enoyl-CoA hydratase II (PaaG); Belongs to the enoyl-CoA hydratase/isomerase family. (263 aa)
Bphy_3179PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xau:Xaut_3350 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (275 aa)
Bphy_3560PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B0962 putative enoyl coenzyme A hydratase-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
Bphy_3561Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: bxe:Bxe_B0961 propionyl-CoA carboxylase. (535 aa)
Bphy_4071PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B0279 putative enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (283 aa)
accDacetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (290 aa)
Bphy_4841PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_C1034 putative enoyl-CoA hydratase/isomerase. (254 aa)
Bphy_4887PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_C6037 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (262 aa)
Bphy_5083TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: bxe:Bxe_B1848 putative malonate decarboxylase gamma subunit. (272 aa)
Bphy_5084TIGRFAM: malonate decarboxylase, beta subunit; KEGG: bxe:Bxe_B1847 malonate decarboxylase, beta subunit. (296 aa)
Bphy_5124PFAM: protein of unknown function DUF107; KEGG: bxe:Bxe_B1082 hypothetical protein. (508 aa)
Bphy_5130PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B1088 enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (268 aa)
Bphy_5131PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B1089 enoyl-CoA hydratase/isomerase family. (383 aa)
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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