STRINGSTRING
Bphy_0186 Bphy_0186 Bphy_0471 Bphy_0471 Bphy_0478 Bphy_0478 Bphy_0479 Bphy_0479 Bphy_0519 Bphy_0519 Bphy_0647 Bphy_0647 Bphy_0648 Bphy_0648 Bphy_0837 Bphy_0837 Bphy_0922 Bphy_0922 Bphy_0925 Bphy_0925 Bphy_0926 Bphy_0926 lpxA lpxA Bphy_1392 Bphy_1392 Bphy_2410 Bphy_2410 Bphy_2411 Bphy_2411 Bphy_3453 Bphy_3453 Bphy_3491 Bphy_3491 Bphy_3492 Bphy_3492 Bphy_4019 Bphy_4019 Bphy_5503 Bphy_5503 Bphy_5504 Bphy_5504
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Bphy_0186PFAM: DSBA oxidoreductase; KEGG: bxe:Bxe_A4247 putative thiol-disulfide interchange protein. (212 aa)
Bphy_0471Protease Do; KEGG: bxe:Bxe_A0701 serine protease, subfamily S1C; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family. (500 aa)
Bphy_0478TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A0708 membrane fusion protein, RND efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (416 aa)
Bphy_0479TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_A0709 RND family hydrophobe/amphiphile efflux pump. (1064 aa)
Bphy_0519N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: bxe:Bxe_A0746 N-acetylmuramoyl-L-alanine amidase. (515 aa)
Bphy_0647TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B1229 RND efflux pump, membrane fusion protein, CzcB subfamily; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (425 aa)
Bphy_0648TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_B1230 hydrophobe/amphiphile efflux pump, RND family. (1089 aa)
Bphy_0837Protease Do; KEGG: bxe:Bxe_A1081 subfamily S1C, unassigned peptidase; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family. (502 aa)
Bphy_0922PFAM: polysaccharide deacetylase; KEGG: bxe:Bxe_A2390 putative polysaccharide deacetylase. (298 aa)
Bphy_0925PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2387 putative polymixin resistance glycosyltransferase. (349 aa)
Bphy_0926PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_A2386 putative glutamine-scyllo-inositol transaminase, LPS biosynthesis-related. (383 aa)
lpxAacyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (262 aa)
Bphy_1392Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (193 aa)
Bphy_2410TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_0527 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (383 aa)
Bphy_2411PFAM: acriflavin resistance protein; KEGG: cvi:CV_1626 probable multidrug efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1013 aa)
Bphy_3453TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_B0733 type I secretion outer membrane protein, TolC. (432 aa)
Bphy_3491TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_A0709 RND family hydrophobe/amphiphile efflux pump. (1052 aa)
Bphy_3492TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A0708 membrane fusion protein, RND efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (405 aa)
Bphy_4019PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: bxe:Bxe_A2033 conserved transmembrane protein, LpiA-like. (864 aa)
Bphy_5503TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B1229 RND efflux pump, membrane fusion protein, CzcB subfamily; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (445 aa)
Bphy_5504TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_B1230 hydrophobe/amphiphile efflux pump, RND family. (1089 aa)
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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