(13 nodes) SNARE, and SNARE complex assembly network (Enhydra lutris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111141341	Syntaxin-16 isoform X2; Belongs to the syntaxin family. (338 aa)
	LOC111143510	Syntaxin-12; Belongs to the syntaxin family. (274 aa)
	LOC111142613	Synaptosomal-associated protein 29. (258 aa)
	LOC111144937	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1. (224 aa)
	LOC111145830	Syntaxin-17; Belongs to the syntaxin family. (302 aa)
	LOC111147517	Syntaxin-7; Belongs to the syntaxin family. (261 aa)
	LOC111148066	Vesicle-associated membrane protein 8. (101 aa)
	LOC111148535	Vesicle transport through interaction with t-SNAREs homolog 1B. (232 aa)
	LOC111150842	Vesicle-associated membrane protein 4. (141 aa)
	LOC111150879	Syntaxin-6; Belongs to the syntaxin family. (255 aa)
	LOC111157062	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family. (198 aa)
	LOC111161111	Syntaxin-8. (236 aa)
	LOC111162497	Syntaxin-10 isoform X1. (249 aa)

Your Current Organism:

Enhydra lutris

NCBI taxonomy Id: 391180
Other names: E. lutris kenyoni, Enhydra lutris kenyoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111141341	LOC111142613	A0A2Y9IQ93	A0A2Y9J0L4	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Synaptosomal-associated protein 29.	0.778
LOC111141341	LOC111143510	A0A2Y9IQ93	A0A2Y9IWM4	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Syntaxin-12; Belongs to the syntaxin family.	0.433
LOC111141341	LOC111144937	A0A2Y9IQ93	A0A2Y9J6B5	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1.	0.998
LOC111141341	LOC111145830	A0A2Y9IQ93	A0A2Y9J745	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Syntaxin-17; Belongs to the syntaxin family.	0.757
LOC111141341	LOC111148066	A0A2Y9IQ93	A0A2Y9JHV4	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Vesicle-associated membrane protein 8.	0.780
LOC111141341	LOC111148535	A0A2Y9IQ93	A0A2Y9JIR0	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Vesicle transport through interaction with t-SNAREs homolog 1B.	0.982
LOC111141341	LOC111150842	A0A2Y9IQ93	A0A2Y9K3C2	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Vesicle-associated membrane protein 4.	0.998
LOC111141341	LOC111150879	A0A2Y9IQ93	A0A2Y9K3K2	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Syntaxin-6; Belongs to the syntaxin family.	0.991
LOC111141341	LOC111157062	A0A2Y9IQ93	A0A2Y9KJD1	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.	0.979
LOC111141341	LOC111161111	A0A2Y9IQ93	A0A2Y9LFE3	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Syntaxin-8.	0.897
LOC111141341	LOC111162497	A0A2Y9IQ93	A0A2Y9LGE5	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	Syntaxin-10 isoform X1.	0.958
LOC111142613	LOC111141341	A0A2Y9J0L4	A0A2Y9IQ93	Synaptosomal-associated protein 29.	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	0.778
LOC111142613	LOC111143510	A0A2Y9J0L4	A0A2Y9IWM4	Synaptosomal-associated protein 29.	Syntaxin-12; Belongs to the syntaxin family.	0.723
LOC111142613	LOC111144937	A0A2Y9J0L4	A0A2Y9J6B5	Synaptosomal-associated protein 29.	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1.	0.659
LOC111142613	LOC111145830	A0A2Y9J0L4	A0A2Y9J745	Synaptosomal-associated protein 29.	Syntaxin-17; Belongs to the syntaxin family.	0.999
LOC111142613	LOC111147517	A0A2Y9J0L4	A0A2Y9JF99	Synaptosomal-associated protein 29.	Syntaxin-7; Belongs to the syntaxin family.	0.875
LOC111142613	LOC111148066	A0A2Y9J0L4	A0A2Y9JHV4	Synaptosomal-associated protein 29.	Vesicle-associated membrane protein 8.	0.998
LOC111142613	LOC111148535	A0A2Y9J0L4	A0A2Y9JIR0	Synaptosomal-associated protein 29.	Vesicle transport through interaction with t-SNAREs homolog 1B.	0.504
LOC111142613	LOC111150842	A0A2Y9J0L4	A0A2Y9K3C2	Synaptosomal-associated protein 29.	Vesicle-associated membrane protein 4.	0.833
LOC111142613	LOC111150879	A0A2Y9J0L4	A0A2Y9K3K2	Synaptosomal-associated protein 29.	Syntaxin-6; Belongs to the syntaxin family.	0.839