(15 nodes) Proteasome assembly network (Enhydra lutris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111156408	26S proteasome non-ATPase regulatory subunit 9 isoform X1. (223 aa)
	LOC111156706	Proteasome assembly chaperone 4. (123 aa)
	LOC111161293	26S proteasome non-ATPase regulatory subunit 10 isoform X1. (226 aa)
	LOC111145832	26S proteasome non-ATPase regulatory subunit 5 isoform X1. (504 aa)
	LOC111151359	26S proteasome non-ATPase regulatory subunit 11. (422 aa)
	LOC111155725	Proteasome assembly chaperone 1; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg2. (291 aa)
	LOC111159539	Proteasomal ATPase-associated factor 1 isoform X1. (392 aa)
	LOC111141807	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1. (406 aa)
	LOC111142512	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family. (264 aa)
	LOC111158547	Proteasome maturation protein. (141 aa)
	LOC111147630	LOW QUALITY PROTEIN: 26S proteasome complex subunit SEM1. (66 aa)
	LOC111146784	OTU domain-containing protein 6B isoform X1. (324 aa)
	LOC111144727	LOW QUALITY PROTEIN: proteasome assembly chaperone 1-like. (261 aa)
	LOC111146047	Proteasome assembly chaperone 3. (122 aa)
	LOC111145668	Proteasome-associated protein ECM29 homolog isoform X1. (1846 aa)

Your Current Organism:

Enhydra lutris

NCBI taxonomy Id: 391180
Other names: E. lutris kenyoni, Enhydra lutris kenyoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111141807	LOC111145668	A0A2Y9INQ6	A0A2Y9JFB2	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	Proteasome-associated protein ECM29 homolog isoform X1.	0.776
LOC111141807	LOC111145832	A0A2Y9INQ6	A0A2Y9JGA2	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	26S proteasome non-ATPase regulatory subunit 5 isoform X1.	0.975
LOC111141807	LOC111146047	A0A2Y9INQ6	A0A2Y9J838	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	Proteasome assembly chaperone 3.	0.506
LOC111141807	LOC111147630	A0A2Y9INQ6	A0A2Y9JEU1	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	LOW QUALITY PROTEIN: 26S proteasome complex subunit SEM1.	0.834
LOC111141807	LOC111151359	A0A2Y9INQ6	A0A2Y9JVB4	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	26S proteasome non-ATPase regulatory subunit 11.	0.990
LOC111141807	LOC111156408	A0A2Y9INQ6	A0A2Y9KUX9	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	26S proteasome non-ATPase regulatory subunit 9 isoform X1.	0.790
LOC111141807	LOC111159539	A0A2Y9INQ6	A0A2Y9L8K4	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	Proteasomal ATPase-associated factor 1 isoform X1.	0.595
LOC111141807	LOC111161293	A0A2Y9INQ6	A0A2Y9L2W8	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	26S proteasome non-ATPase regulatory subunit 10 isoform X1.	0.882
LOC111142512	LOC111144727	A0A2Y9IVS3	A0A2Y9JAR6	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	LOW QUALITY PROTEIN: proteasome assembly chaperone 1-like.	0.788
LOC111142512	LOC111146047	A0A2Y9IVS3	A0A2Y9J838	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	Proteasome assembly chaperone 3.	0.860
LOC111142512	LOC111155725	A0A2Y9IVS3	A0A2Y9KE46	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	Proteasome assembly chaperone 1; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg2.	0.788
LOC111142512	LOC111156706	A0A2Y9IVS3	A0A2Y9KWD3	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	Proteasome assembly chaperone 4.	0.950
LOC111142512	LOC111158547	A0A2Y9IVS3	A0A2Y9KQV6	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	Proteasome maturation protein.	0.958
LOC111142512	LOC111159539	A0A2Y9IVS3	A0A2Y9L8K4	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	Proteasomal ATPase-associated factor 1 isoform X1.	0.441
LOC111144727	LOC111142512	A0A2Y9JAR6	A0A2Y9IVS3	LOW QUALITY PROTEIN: proteasome assembly chaperone 1-like.	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	0.788
LOC111144727	LOC111146047	A0A2Y9JAR6	A0A2Y9J838	LOW QUALITY PROTEIN: proteasome assembly chaperone 1-like.	Proteasome assembly chaperone 3.	0.583
LOC111144727	LOC111158547	A0A2Y9JAR6	A0A2Y9KQV6	LOW QUALITY PROTEIN: proteasome assembly chaperone 1-like.	Proteasome maturation protein.	0.617
LOC111145668	LOC111141807	A0A2Y9JFB2	A0A2Y9INQ6	Proteasome-associated protein ECM29 homolog isoform X1.	LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1.	0.776
LOC111145668	LOC111151359	A0A2Y9JFB2	A0A2Y9JVB4	Proteasome-associated protein ECM29 homolog isoform X1.	26S proteasome non-ATPase regulatory subunit 11.	0.792
LOC111145668	LOC111158547	A0A2Y9JFB2	A0A2Y9KQV6	Proteasome-associated protein ECM29 homolog isoform X1.	Proteasome maturation protein.	0.438