(10 nodes) CRD-mediated mRNA stabilization network (Enhydra lutris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111152890	LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1-like. (481 aa)
	LOC111142841	Cold shock domain-containing protein E1 isoform X1. (845 aa)
	LOC111143507	Nuclease-sensitive element-binding protein 1 isoform X1. (370 aa)
	LOC111147248	Insulin-like growth factor 2 mRNA-binding protein 3 isoform X1. (579 aa)
	LOC111146465	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
	LOC111149590	Insulin-like growth factor 2 mRNA-binding protein 2 isoform X2. (605 aa)
	LOC111150769	Heterogeneous nuclear ribonucleoprotein U isoform X1. (825 aa)
	LOC111150713	ATP-dependent RNA helicase A isoform X1. (1284 aa)
	LOC111151570	Insulin-like growth factor 2 mRNA-binding protein 1 isoform X1. (577 aa)
	LOC111158766	Heterogeneous nuclear ribonucleoprotein Q isoform X1. (623 aa)

Your Current Organism:

Enhydra lutris

NCBI taxonomy Id: 391180
Other names: E. lutris kenyoni, Enhydra lutris kenyoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111142841	LOC111146465	A0A2Y9IU82	A0A2Y9JDH4	Cold shock domain-containing protein E1 isoform X1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.702
LOC111142841	LOC111150769	A0A2Y9IU82	A0A2Y9JSU3	Cold shock domain-containing protein E1 isoform X1.	Heterogeneous nuclear ribonucleoprotein U isoform X1.	0.474
LOC111143507	LOC111146465	A0A2Y9IXC3	A0A2Y9JDH4	Nuclease-sensitive element-binding protein 1 isoform X1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.600
LOC111143507	LOC111150713	A0A2Y9IXC3	A0A2Y9JTC9	Nuclease-sensitive element-binding protein 1 isoform X1.	ATP-dependent RNA helicase A isoform X1.	0.574
LOC111143507	LOC111150769	A0A2Y9IXC3	A0A2Y9JSU3	Nuclease-sensitive element-binding protein 1 isoform X1.	Heterogeneous nuclear ribonucleoprotein U isoform X1.	0.739
LOC111143507	LOC111158766	A0A2Y9IXC3	A0A2Y9L5J2	Nuclease-sensitive element-binding protein 1 isoform X1.	Heterogeneous nuclear ribonucleoprotein Q isoform X1.	0.756
LOC111146465	LOC111142841	A0A2Y9JDH4	A0A2Y9IU82	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Cold shock domain-containing protein E1 isoform X1.	0.702
LOC111146465	LOC111143507	A0A2Y9JDH4	A0A2Y9IXC3	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Nuclease-sensitive element-binding protein 1 isoform X1.	0.600
LOC111146465	LOC111150713	A0A2Y9JDH4	A0A2Y9JTC9	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	ATP-dependent RNA helicase A isoform X1.	0.575
LOC111146465	LOC111150769	A0A2Y9JDH4	A0A2Y9JSU3	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Heterogeneous nuclear ribonucleoprotein U isoform X1.	0.574
LOC111146465	LOC111152890	A0A2Y9JDH4	A0A2Y9KD53	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1-like.	0.600
LOC111147248	LOC111149590	A0A2Y9JCW4	A0A2Y9JSA8	Insulin-like growth factor 2 mRNA-binding protein 3 isoform X1.	Insulin-like growth factor 2 mRNA-binding protein 2 isoform X2.	0.442
LOC111149590	LOC111147248	A0A2Y9JSA8	A0A2Y9JCW4	Insulin-like growth factor 2 mRNA-binding protein 2 isoform X2.	Insulin-like growth factor 2 mRNA-binding protein 3 isoform X1.	0.442
LOC111149590	LOC111150713	A0A2Y9JSA8	A0A2Y9JTC9	Insulin-like growth factor 2 mRNA-binding protein 2 isoform X2.	ATP-dependent RNA helicase A isoform X1.	0.482
LOC111149590	LOC111150769	A0A2Y9JSA8	A0A2Y9JSU3	Insulin-like growth factor 2 mRNA-binding protein 2 isoform X2.	Heterogeneous nuclear ribonucleoprotein U isoform X1.	0.456
LOC111149590	LOC111158766	A0A2Y9JSA8	A0A2Y9L5J2	Insulin-like growth factor 2 mRNA-binding protein 2 isoform X2.	Heterogeneous nuclear ribonucleoprotein Q isoform X1.	0.449
LOC111150713	LOC111143507	A0A2Y9JTC9	A0A2Y9IXC3	ATP-dependent RNA helicase A isoform X1.	Nuclease-sensitive element-binding protein 1 isoform X1.	0.574
LOC111150713	LOC111146465	A0A2Y9JTC9	A0A2Y9JDH4	ATP-dependent RNA helicase A isoform X1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.575
LOC111150713	LOC111149590	A0A2Y9JTC9	A0A2Y9JSA8	ATP-dependent RNA helicase A isoform X1.	Insulin-like growth factor 2 mRNA-binding protein 2 isoform X2.	0.482
LOC111150713	LOC111150769	A0A2Y9JTC9	A0A2Y9JSU3	ATP-dependent RNA helicase A isoform X1.	Heterogeneous nuclear ribonucleoprotein U isoform X1.	0.761