(8 nodes) Orange domain network (Enhydra lutris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111154575	Transcription factor HES-5. (167 aa)
	LOC111159974	Class E basic helix-loop-helix protein 41. (484 aa)
	LOC111156810	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2. (309 aa)
	LOC111144044	Class E basic helix-loop-helix protein 40. (412 aa)
	LOC111155108	Transcription factor HES-1. (281 aa)
	LOC111154753	Transcription factor HES-4. (225 aa)
	LOC111147815	Hairy/enhancer-of-split related with YRPW motif protein 2. (337 aa)
	LOC111143160	Hairy/enhancer-of-split related with YRPW motif-like protein. (328 aa)

Your Current Organism:

Enhydra lutris

NCBI taxonomy Id: 391180
Other names: E. lutris kenyoni, Enhydra lutris kenyoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111143160	LOC111147815	A0A2Y9IUP4	A0A2Y9JFE1	Hairy/enhancer-of-split related with YRPW motif-like protein.	Hairy/enhancer-of-split related with YRPW motif protein 2.	0.900
LOC111143160	LOC111156810	A0A2Y9IUP4	A0A2Y9KJ20	Hairy/enhancer-of-split related with YRPW motif-like protein.	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2.	0.902
LOC111144044	LOC111159974	A0A2Y9J2D4	A0A2Y9L452	Class E basic helix-loop-helix protein 40.	Class E basic helix-loop-helix protein 41.	0.923
LOC111147815	LOC111143160	A0A2Y9JFE1	A0A2Y9IUP4	Hairy/enhancer-of-split related with YRPW motif protein 2.	Hairy/enhancer-of-split related with YRPW motif-like protein.	0.900
LOC111147815	LOC111156810	A0A2Y9JFE1	A0A2Y9KJ20	Hairy/enhancer-of-split related with YRPW motif protein 2.	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2.	0.900
LOC111154575	LOC111155108	A0A2Y9K887	A0A2Y9KHC7	Transcription factor HES-5.	Transcription factor HES-1.	0.909
LOC111155108	LOC111154575	A0A2Y9KHC7	A0A2Y9K887	Transcription factor HES-1.	Transcription factor HES-5.	0.909
LOC111156810	LOC111143160	A0A2Y9KJ20	A0A2Y9IUP4	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2.	Hairy/enhancer-of-split related with YRPW motif-like protein.	0.902
LOC111156810	LOC111147815	A0A2Y9KJ20	A0A2Y9JFE1	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2.	Hairy/enhancer-of-split related with YRPW motif protein 2.	0.900
LOC111159974	LOC111144044	A0A2Y9L452	A0A2Y9J2D4	Class E basic helix-loop-helix protein 41.	Class E basic helix-loop-helix protein 40.	0.923