(11 nodes) Mixed, incl. Precatalytic spliceosome, and FF domain network (Vigna angularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0L9TDV7	Uncharacterized protein. (513 aa)
	A0A0L9TMB2	MFAP1 domain-containing protein. (436 aa)
	A0A0L9TRR8	Uncharacterized protein. (536 aa)
	A0A0L9TTI2	Uncharacterized protein. (911 aa)
	A0A0L9TVP5	Matrin-type domain-containing protein. (237 aa)
	A0A0L9TY39	Uncharacterized protein. (160 aa)
	A0A0L9U9R1	U1-type domain-containing protein. (237 aa)
	A0A0L9UBD6	Uncharacterized protein. (565 aa)
	A0A0L9UT28	Uncharacterized protein. (73 aa)
	A0A0L9V8R5	Uncharacterized protein. (975 aa)
	A0A0L9VF19	Ubiquitin-like domain-containing protein. (73 aa)

Your Current Organism:

Vigna angularis

NCBI taxonomy Id: 3914
Other names: Phaseolus angularis, V. angularis, Vigna angularis (Willd.) Ohwi & H.Ohashi, adzuki bean, azuki bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0L9TDV7	A0A0L9TMB2	Uncharacterized protein.	MFAP1 domain-containing protein.	0.982
A0A0L9TDV7	A0A0L9TRR8	Uncharacterized protein.	Uncharacterized protein.	0.734
A0A0L9TDV7	A0A0L9TTI2	Uncharacterized protein.	Uncharacterized protein.	0.894
A0A0L9TDV7	A0A0L9TVP5	Uncharacterized protein.	Matrin-type domain-containing protein.	0.913
A0A0L9TDV7	A0A0L9TY39	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0L9TDV7	A0A0L9U9R1	Uncharacterized protein.	U1-type domain-containing protein.	0.894
A0A0L9TDV7	A0A0L9UBD6	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A0L9TDV7	A0A0L9UT28	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0L9TDV7	A0A0L9VF19	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.900
A0A0L9TMB2	A0A0L9TDV7	MFAP1 domain-containing protein.	Uncharacterized protein.	0.982
A0A0L9TMB2	A0A0L9TRR8	MFAP1 domain-containing protein.	Uncharacterized protein.	0.892
A0A0L9TMB2	A0A0L9TTI2	MFAP1 domain-containing protein.	Uncharacterized protein.	0.972
A0A0L9TMB2	A0A0L9TVP5	MFAP1 domain-containing protein.	Matrin-type domain-containing protein.	0.933
A0A0L9TMB2	A0A0L9TY39	MFAP1 domain-containing protein.	Uncharacterized protein.	0.968
A0A0L9TMB2	A0A0L9U9R1	MFAP1 domain-containing protein.	U1-type domain-containing protein.	0.972
A0A0L9TMB2	A0A0L9UBD6	MFAP1 domain-containing protein.	Uncharacterized protein.	0.962
A0A0L9TMB2	A0A0L9UT28	MFAP1 domain-containing protein.	Uncharacterized protein.	0.968
A0A0L9TMB2	A0A0L9V8R5	MFAP1 domain-containing protein.	Uncharacterized protein.	0.990
A0A0L9TMB2	A0A0L9VF19	MFAP1 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.979
A0A0L9TRR8	A0A0L9TDV7	Uncharacterized protein.	Uncharacterized protein.	0.734