5 items (Vigna angularis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0L9T8S5	Uncharacterized protein. (441 aa)
	A0A0L9TNQ9	Uncharacterized protein. (378 aa)
	A0A0L9TYW7	Uncharacterized protein. (490 aa)
	A0A0L9UBD1	Uncharacterized protein. (119 aa)
	A0A0L9VPP3	Uncharacterized protein. (124 aa)

Your Current Organism:

Vigna angularis

NCBI taxonomy Id: 3914
Other names: Phaseolus angularis, V. angularis, Vigna angularis (Willd.) Ohwi & H.Ohashi, adzuki bean, azuki bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0L9T8S5	A0A0L9TNQ9	Uncharacterized protein.	Uncharacterized protein.	0.493
A0A0L9T8S5	A0A0L9TYW7	Uncharacterized protein.	Uncharacterized protein.	0.490
A0A0L9T8S5	A0A0L9UBD1	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A0L9TNQ9	A0A0L9T8S5	Uncharacterized protein.	Uncharacterized protein.	0.493
A0A0L9TNQ9	A0A0L9TYW7	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A0L9TNQ9	A0A0L9UBD1	Uncharacterized protein.	Uncharacterized protein.	0.528
A0A0L9TNQ9	A0A0L9VPP3	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A0L9TYW7	A0A0L9T8S5	Uncharacterized protein.	Uncharacterized protein.	0.490
A0A0L9TYW7	A0A0L9TNQ9	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A0L9TYW7	A0A0L9UBD1	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0L9TYW7	A0A0L9VPP3	Uncharacterized protein.	Uncharacterized protein.	0.455
A0A0L9UBD1	A0A0L9T8S5	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A0L9UBD1	A0A0L9TNQ9	Uncharacterized protein.	Uncharacterized protein.	0.528
A0A0L9UBD1	A0A0L9TYW7	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0L9UBD1	A0A0L9VPP3	Uncharacterized protein.	Uncharacterized protein.	0.527
A0A0L9VPP3	A0A0L9TNQ9	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A0L9VPP3	A0A0L9TYW7	Uncharacterized protein.	Uncharacterized protein.	0.455
A0A0L9VPP3	A0A0L9UBD1	Uncharacterized protein.	Uncharacterized protein.	0.527