(34 nodes) Mixed, incl. Protein secretion, and Bacterial export proteins, family 1 network (Limnobacter sp. MED105)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EDM84380.1	Hypothetical protein. (235 aa)
	EDM84381.1	Hypothetical protein. (208 aa)
	EDM81987.1	Type IV B pilus protein; COG1450 Type II secretory pathway, component PulD. (312 aa)
	EDM84562.1	Hypothetical protein. (90 aa)
	EDM84564.1	COG1360 Flagellar motor protein. (253 aa)
	EDM84565.1	Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. (140 aa)
	EDM84566.1	COG4669 Type III secretory pathway, lipoprotein EscJ. (265 aa)
	EDM84567.1	Hypothetical protein. (247 aa)
	EDM84568.1	Hypothetical protein; COG1390 Archaeal/vacuolar-type H+-ATPase subunit E. (222 aa)
	EDM84569.1	Putative type III secretion protein; COG1450 Type II secretory pathway, component PulD. (530 aa)
	EDM84570.1	Hypothetical protein. (396 aa)
	EDM84571.1	Hypothetical protein. (113 aa)
	EDM84572.1	Hypothetical protein. (178 aa)
	EDM84573.1	COG0515 Serine/threonine protein kinase. (113 aa)
	EDM84574.1	Hypothetical protein. (71 aa)
	EDM84575.1	Hypothetical protein. (48 aa)
	EDM84576.1	Hypothetical protein. (77 aa)
	EDM84577.1	Hypothetical protein; COG0233 Ribosome recycling factor. (185 aa)
	EDM84578.1	Hypothetical protein; COG0497 ATPase involved in DNA repair. (397 aa)
	EDM84579.1	Hypothetical protein. (293 aa)
	EDM84580.1	Hypothetical protein; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. (246 aa)
	EDM84581.1	Hypothetical protein. (484 aa)
	EDM84582.1	COG4792 Type III secretory pathway, component EscU. (353 aa)
	fliP	Flagellar biosynthesis protein P; COG4791 Type III secretory pathway, component EscT. (266 aa)
	EDM84584.1	Hypothetical protein; COG4794 Type III secretory pathway, component EscS. (88 aa)
	EDM84585.1	Yop virulence translocation protein R; COG4790 Type III secretory pathway, component EscR. (217 aa)
	EDM84586.1	Hypothetical protein; COG0525 Valyl-tRNA synthetase. (359 aa)
	EDM84587.1	Hypothetical protein; COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32). (138 aa)
	EDM84589.1	Hypothetical protein. (312 aa)
	EDM84590.1	COG4789 Type III secretory pathway, component EscV. (705 aa)
	EDM84592.1	Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. (164 aa)
	EDM84817.1	Type II secretory pathway component PulD-like protein; COG0457 FOG: TPR repeat; Belongs to the bacterial secretin family. (633 aa)
	EDM83003.1	Hypothetical protein. (488 aa)
	murJ	Hypothetical protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (519 aa)

Your Current Organism:

Limnobacter sp. MED105

NCBI taxonomy Id: 391597
Other names: L. sp. MED105

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM81987.1	EDM84381.1	LMED105_02440	LMED105_02423	Type IV B pilus protein; COG1450 Type II secretory pathway, component PulD.	Hypothetical protein.	0.810
EDM81987.1	EDM84566.1	LMED105_02440	LMED105_03425	Type IV B pilus protein; COG1450 Type II secretory pathway, component PulD.	COG4669 Type III secretory pathway, lipoprotein EscJ.	0.587
EDM81987.1	EDM84584.1	LMED105_02440	LMED105_03515	Type IV B pilus protein; COG1450 Type II secretory pathway, component PulD.	Hypothetical protein; COG4794 Type III secretory pathway, component EscS.	0.568
EDM81987.1	EDM84585.1	LMED105_02440	LMED105_03520	Type IV B pilus protein; COG1450 Type II secretory pathway, component PulD.	Yop virulence translocation protein R; COG4790 Type III secretory pathway, component EscR.	0.614
EDM81987.1	EDM84590.1	LMED105_02440	LMED105_03545	Type IV B pilus protein; COG1450 Type II secretory pathway, component PulD.	COG4789 Type III secretory pathway, component EscV.	0.539
EDM81987.1	fliP	LMED105_02440	LMED105_03510	Type IV B pilus protein; COG1450 Type II secretory pathway, component PulD.	Flagellar biosynthesis protein P; COG4791 Type III secretory pathway, component EscT.	0.577
EDM83003.1	EDM84566.1	LMED105_11975	LMED105_03425	Hypothetical protein.	COG4669 Type III secretory pathway, lipoprotein EscJ.	0.779
EDM83003.1	EDM84582.1	LMED105_11975	LMED105_03505	Hypothetical protein.	COG4792 Type III secretory pathway, component EscU.	0.737
EDM83003.1	EDM84584.1	LMED105_11975	LMED105_03515	Hypothetical protein.	Hypothetical protein; COG4794 Type III secretory pathway, component EscS.	0.650
EDM83003.1	EDM84585.1	LMED105_11975	LMED105_03520	Hypothetical protein.	Yop virulence translocation protein R; COG4790 Type III secretory pathway, component EscR.	0.663
EDM83003.1	EDM84590.1	LMED105_11975	LMED105_03545	Hypothetical protein.	COG4789 Type III secretory pathway, component EscV.	0.827
EDM83003.1	EDM84817.1	LMED105_11975	LMED105_04692	Hypothetical protein.	Type II secretory pathway component PulD-like protein; COG0457 FOG: TPR repeat; Belongs to the bacterial secretin family.	0.873
EDM83003.1	fliP	LMED105_11975	LMED105_03510	Hypothetical protein.	Flagellar biosynthesis protein P; COG4791 Type III secretory pathway, component EscT.	0.690
EDM83003.1	murJ	LMED105_11975	LMED105_15149	Hypothetical protein.	Hypothetical protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.	0.818
EDM84380.1	EDM84381.1	LMED105_02418	LMED105_02423	Hypothetical protein.	Hypothetical protein.	0.669
EDM84380.1	EDM84582.1	LMED105_02418	LMED105_03505	Hypothetical protein.	COG4792 Type III secretory pathway, component EscU.	0.420
EDM84381.1	EDM81987.1	LMED105_02423	LMED105_02440	Hypothetical protein.	Type IV B pilus protein; COG1450 Type II secretory pathway, component PulD.	0.810
EDM84381.1	EDM84380.1	LMED105_02423	LMED105_02418	Hypothetical protein.	Hypothetical protein.	0.669
EDM84381.1	EDM84566.1	LMED105_02423	LMED105_03425	Hypothetical protein.	COG4669 Type III secretory pathway, lipoprotein EscJ.	0.587
EDM84381.1	EDM84584.1	LMED105_02423	LMED105_03515	Hypothetical protein.	Hypothetical protein; COG4794 Type III secretory pathway, component EscS.	0.568