(43 nodes) Mixed, incl. Amino acid transport, and ABC transporter, permease network (Octadecabacter antarcticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	urtA	Putative urea ABC transporter periplasmatic substrate-binding protein UrtA. (434 aa)
	urtB	Putative urea ABC transporter permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family. (646 aa)
	urtC	Putative urea ABC transporter permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family. (410 aa)
	urtD	Putative urea ABC transporter ATP-binding protein UrtD. (246 aa)
	urtE	Putative urea ABC transporter ATP-binding protein UrtE. (231 aa)
	AGI66972.1	High-affinity branched-chain amino acid transport ATP-binding protein. (257 aa)
	AGI66973.1	High-affinity branched-chain amino acid transport ATP-binding protein. (256 aa)
	AGI66974.1	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (398 aa)
	AGI66975.1	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (343 aa)
	AGI66976.1	Hypothetical protein. (456 aa)
	AGI67558.1	Putative aliphatic amidase expression-regulating protein. (393 aa)
	AGI67559.1	Putative response regulator. (220 aa)
	AGI67560.1	Putative urea ABC transporter; Substrate binding protein. (412 aa)
	AGI67561.1	ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (290 aa)
	AGI67562.1	ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (366 aa)
	AGI67563.1	ABC transporter ATP-binding protein. (239 aa)
	AGI67564.1	ABC-transporter ATP-binding protein. (237 aa)
	amiR	Aliphatic amidase regulator. (187 aa)
	amiC1	Aliphatic amidase expression-regulating protein AmiC. (377 aa)
	AGI67635.1	ABC transporter ATP-binding protein. (232 aa)
	AGI67636.1	ABC transporter permease/ATPase-fusion protein; Belongs to the binding-protein-dependent transport system permease family. (603 aa)
	AGI67637.1	ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (288 aa)
	AGI67638.1	ABC transporter periplasmatic substrate-binding protein. (401 aa)
	AGI68055.1	Putative branched-chain amino acid ABC transporter periplasmic substrate binding protein. (396 aa)
	AGI68056.1	Branched chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (366 aa)
	AGI68057.1	Branched chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (315 aa)
	AGI68058.1	Branched chain amino acid ABC transporter ATP-binding protein. (238 aa)
	AGI68059.1	Branched chain amino acid ABC transporter ATP-binding protein. (259 aa)
	AGI68663.1	Putative ABC transporter periplasmatic solute-binding protein. (419 aa)
	AGI68892.1	IS91-family transposase. (252 aa)
	AGI68893.1	Hypothetical protein. (81 aa)
	AGI68894.1	isobutyryl-CoA dehydrogenase. (369 aa)
	AGI68895.1	3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa)
	thlA	acetyl-CoA acetyltransferase ThlA; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	AGI68897.1	Hypothetical protein; Similar to phenylacetate-coenzyme A ligase. (399 aa)
	AGI68898.1	Branched chain amino acid ABC transporter ATP-binding protein. (271 aa)
	AGI68899.1	Putative branched-chain amino acid ABC transporter periplasmic substrate binding protein. (427 aa)
	AGI68900.1	Branched chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (358 aa)
	AGI68901.1	Branched chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (332 aa)
	AGI68902.1	Branched chain amino acid ABC transporter ATP-binding protein. (272 aa)
	AGI68903.1	Putative fatty-acid--CoA ligase. (655 aa)
	AGI68904.1	Two component regulatory system histidine kinase. (670 aa)
	AGI68905.1	Two component regulatory system response regulator. (234 aa)

Your Current Organism:

Octadecabacter antarcticus

NCBI taxonomy Id: 391626
Other names: O. antarcticus 307, Octadecabacter antarcticus 307, Octadecabacter antarcticus CIP 106731, Octadecabacter antarcticus str. 307, Octadecabacter antarcticus strain 307, unidentified alpha proteobacterium (clone 307), unidentified alpha proteobacterium clone 307

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI66972.1	AGI66973.1	OAN307_c12780	OAN307_c12790	High-affinity branched-chain amino acid transport ATP-binding protein.	High-affinity branched-chain amino acid transport ATP-binding protein.	0.918
AGI66972.1	AGI66974.1	OAN307_c12780	OAN307_c12800	High-affinity branched-chain amino acid transport ATP-binding protein.	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.969
AGI66972.1	AGI66975.1	OAN307_c12780	OAN307_c12810	High-affinity branched-chain amino acid transport ATP-binding protein.	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.957
AGI66972.1	AGI66976.1	OAN307_c12780	OAN307_c12820	High-affinity branched-chain amino acid transport ATP-binding protein.	Hypothetical protein.	0.904
AGI66972.1	AGI67561.1	OAN307_c12780	OAN307_c19090	High-affinity branched-chain amino acid transport ATP-binding protein.	ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.716
AGI66972.1	AGI67562.1	OAN307_c12780	OAN307_c19100	High-affinity branched-chain amino acid transport ATP-binding protein.	ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.731
AGI66972.1	AGI67563.1	OAN307_c12780	OAN307_c19110	High-affinity branched-chain amino acid transport ATP-binding protein.	ABC transporter ATP-binding protein.	0.526
AGI66972.1	AGI67636.1	OAN307_c12780	OAN307_c19900	High-affinity branched-chain amino acid transport ATP-binding protein.	ABC transporter permease/ATPase-fusion protein; Belongs to the binding-protein-dependent transport system permease family.	0.977
AGI66972.1	AGI67637.1	OAN307_c12780	OAN307_c19910	High-affinity branched-chain amino acid transport ATP-binding protein.	ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.788
AGI66972.1	AGI67638.1	OAN307_c12780	OAN307_c19920	High-affinity branched-chain amino acid transport ATP-binding protein.	ABC transporter periplasmatic substrate-binding protein.	0.406
AGI66972.1	AGI68055.1	OAN307_c12780	OAN307_c24480	High-affinity branched-chain amino acid transport ATP-binding protein.	Putative branched-chain amino acid ABC transporter periplasmic substrate binding protein.	0.758
AGI66972.1	AGI68056.1	OAN307_c12780	OAN307_c24490	High-affinity branched-chain amino acid transport ATP-binding protein.	Branched chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.971
AGI66972.1	AGI68057.1	OAN307_c12780	OAN307_c24500	High-affinity branched-chain amino acid transport ATP-binding protein.	Branched chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.816
AGI66972.1	AGI68059.1	OAN307_c12780	OAN307_c24520	High-affinity branched-chain amino acid transport ATP-binding protein.	Branched chain amino acid ABC transporter ATP-binding protein.	0.578
AGI66972.1	AGI68900.1	OAN307_c12780	OAN307_c33990	High-affinity branched-chain amino acid transport ATP-binding protein.	Branched chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.932
AGI66972.1	AGI68901.1	OAN307_c12780	OAN307_c34000	High-affinity branched-chain amino acid transport ATP-binding protein.	Branched chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.562
AGI66972.1	AGI68902.1	OAN307_c12780	OAN307_c34010	High-affinity branched-chain amino acid transport ATP-binding protein.	Branched chain amino acid ABC transporter ATP-binding protein.	0.548
AGI66972.1	urtB	OAN307_c12780	OAN307_c07300	High-affinity branched-chain amino acid transport ATP-binding protein.	Putative urea ABC transporter permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.	0.604
AGI66972.1	urtC	OAN307_c12780	OAN307_c07310	High-affinity branched-chain amino acid transport ATP-binding protein.	Putative urea ABC transporter permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.	0.561
AGI66973.1	AGI66972.1	OAN307_c12790	OAN307_c12780	High-affinity branched-chain amino acid transport ATP-binding protein.	High-affinity branched-chain amino acid transport ATP-binding protein.	0.918

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