STRINGSTRING
Veis_4763 Veis_4763 Veis_1970 Veis_1970 Veis_2004 Veis_2004 rpoD rpoD Veis_2063 Veis_2063 Veis_2241 Veis_2241 rpoB rpoB rpoC rpoC rpoA rpoA Veis_2448 Veis_2448 Veis_2525 Veis_2525 Veis_2590 Veis_2590 Veis_2603 Veis_2603 Veis_2674 Veis_2674 Veis_2764 Veis_2764 Veis_3126 Veis_3126 Veis_3133 Veis_3133 Veis_3200 Veis_3200 Veis_3246 Veis_3246 Veis_3326 Veis_3326 Veis_3435 Veis_3435 Veis_3727 Veis_3727 Veis_3740 Veis_3740 Veis_3850 Veis_3850 Veis_3877 Veis_3877 Veis_3895 Veis_3895 Veis_3972 Veis_3972 Veis_4008 Veis_4008 Veis_4119 Veis_4119 Veis_4169 Veis_4169 rpoZ rpoZ Veis_4252 Veis_4252 Veis_4292 Veis_4292 rpoH rpoH Veis_4484 Veis_4484 Veis_4495 Veis_4495 Veis_4526 Veis_4526 Veis_4593 Veis_4593 Veis_4633 Veis_4633 Veis_4658 Veis_4658 Veis_4678 Veis_4678 Veis_0528 Veis_0528 Veis_4682 Veis_4682 Veis_4683 Veis_4683 Veis_4708 Veis_4708 Veis_4724 Veis_4724 Veis_4732 Veis_4732 Veis_4965 Veis_4965 dnaG dnaG Veis_0115 Veis_0115 Veis_0136 Veis_0136 Veis_0143 Veis_0143 Veis_0387 Veis_0387 Veis_0411 Veis_0411 Veis_0420 Veis_0420 Veis_1964 Veis_1964 Veis_1865 Veis_1865 Veis_1744 Veis_1744 Veis_1743 Veis_1743 nadE nadE Veis_1693 Veis_1693 Veis_1654 Veis_1654 Veis_1324 Veis_1324 Veis_1299 Veis_1299 Veis_0937 Veis_0937 fliA fliA Veis_0814 Veis_0814 Veis_0747 Veis_0747 Veis_0578 Veis_0578
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Veis_4763PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1670 peptidase M16-like. (448 aa)
Veis_1970PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5439 ABC transporter, permease protein. (292 aa)
Veis_2004PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpa:BPP0780 putative peptide ABC transporter permease protein. (298 aa)
rpoDRNA polymerase, sigma 70 subunit, RpoD family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (635 aa)
Veis_2063PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0382 binding-protein-dependent transport systems inner membrane component. (297 aa)
Veis_2241PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll4540 ABC transporter permease protein. (307 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1370 aa)
rpoCDNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1411 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (330 aa)
Veis_2448KEGG: xcb:XC_0073 hypothetical protein. (250 aa)
Veis_2525PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911. (80 aa)
Veis_2590KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal. (414 aa)
Veis_2603KEGG: sma:SAV3100 hypothetical protein. (277 aa)
Veis_2674PFAM: cyclase family protein; KEGG: sil:SPO1446 cyclase, putative. (270 aa)
Veis_2764PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911. (80 aa)
Veis_3126KEGG: rso:RSc0850 hypothetical protein. (105 aa)
Veis_3133KEGG: ljo:LJ0291 Lj965 prophage protein. (254 aa)
Veis_3200PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0195 ABC peptide/opine/nickel family transporter, inner membrane subunit. (301 aa)
Veis_3246RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_1736 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (208 aa)
Veis_3326PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0932 binding-protein-dependent transport systems inner membrane component. (279 aa)
Veis_3435PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1448 putative oligopeptide ABC transporter (permease). (287 aa)
Veis_3727PFAM: Phage P4 alpha, zinc-binding domain protein; KEGG: dar:Daro_2694 hypothetical protein. (361 aa)
Veis_3740RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4 type 2; KEGG: vpa:VP1081 hypothetical protein. (259 aa)
Veis_3850PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component. (287 aa)
Veis_3877PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911. (80 aa)
Veis_3895PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_A3296 ABC-type transporter, permease component: PepT family. (305 aa)
Veis_3972KEGG: pol:Bpro_0292 ABC transporter nitrate-binding protein. (471 aa)
Veis_4008KEGG: bbr:BB0658 hypothetical protein. (95 aa)
Veis_4119PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4026 dipeptide ABC transporter, permease protein. (282 aa)
Veis_4169Hypothetical protein; KEGG: mgm:Mmc1_0133 DNA-damage-inducible protein D. (67 aa)
rpoZDNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (67 aa)
Veis_4252PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_1616 binding-protein-dependent transport systems inner membrane component. (276 aa)
Veis_4292PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0130 binding-protein-dependent transport systems inner membrane component. (301 aa)
rpoHRNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (313 aa)
Veis_4484KEGG: rfr:Rfer_2040 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. (1186 aa)
Veis_4495PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5439 ABC transporter, permease protein. (307 aa)
Veis_4526PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911. (97 aa)
Veis_4593PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0137 binding-protein-dependent transport systems inner membrane component. (308 aa)
Veis_4633Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: bxe:Bxe_A2728 transcriptional regulator, LuxR family. (273 aa)
Veis_4658KEGG: psb:Psyr_3810 integrase, catalytic region. (57 aa)
Veis_4678KEGG: rme:Rmet_4953 hypothetical protein. (344 aa)
Veis_0528PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0073 putative oligopeptide transport system permease protein. (273 aa)
Veis_4682PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911. (97 aa)
Veis_4683PFAM: Integrase, catalytic region; KEGG: psb:Psyr_3810 integrase, catalytic region. (282 aa)
Veis_4708PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911. (97 aa)
Veis_4724PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1445 binding-protein-dependent transport systems inner membrane component. (273 aa)
Veis_4732PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2574 peptide ABC transporter, permease protein. (299 aa)
Veis_4965PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B0719 ABC-type transporter, permease component: PepT family. (309 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (653 aa)
Veis_0115PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component. (285 aa)
Veis_0136PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3231 ABC transporter permease protein. (297 aa)
Veis_0143KEGG: bbr:BB0769 hypothetical protein. (209 aa)
Veis_0387PFAM: cyclase family protein; KEGG: bur:Bcep18194_C7460 putative cyclase. (268 aa)
Veis_0411PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_5625 peptide ABC transporter, permease protein. (276 aa)
Veis_0420PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4910 putative transport system permease protein. (307 aa)
Veis_1964PFAM: cyclase family protein; KEGG: rso:RSc1835 hypothetical protein. (259 aa)
Veis_1865PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_5090 binding-protein-dependent transport systems inner membrane component. (293 aa)
Veis_1744RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pol:Bpro_2316 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)
Veis_1743KEGG: rfr:Rfer_3320 putative transmembrane protein. (157 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (552 aa)
Veis_1693KEGG: pfo:Pfl_2418 hypothetical protein. (236 aa)
Veis_1654PFAM: DNA repair protein RadC; KEGG: rfr:Rfer_3252 DNA repair protein RadC; Belongs to the UPF0758 family. (237 aa)
Veis_1324TIGRFAM: putative regulatory protein, FmdB family; KEGG: bur:Bcep18194_A6054 hypothetical protein. (114 aa)
Veis_1299PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2114 binding-protein-dependent transport systems inner membrane component. (303 aa)
Veis_0937PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component. (281 aa)
fliARNA polymerase, sigma 28 subunit, FliA/WhiG family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (241 aa)
Veis_0814PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1883 probable dipeptide transmembrane ABC transporter protein. (334 aa)
Veis_0747PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_1616 binding-protein-dependent transport systems inner membrane component. (279 aa)
Veis_0578RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (526 aa)
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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