STRINGSTRING
Veis_0274 Veis_0274 dapD dapD dapE dapE Veis_0362 Veis_0362 Veis_0720 Veis_0720 Veis_0722 Veis_0722 dapB dapB dapA dapA Veis_1762 Veis_1762 argD argD Veis_2368 Veis_2368 Veis_2663 Veis_2663 Veis_2739 Veis_2739 Veis_4113 Veis_4113 Veis_4390 Veis_4390 dapF dapF murF murF Veis_4686 Veis_4686 lysA lysA Veis_4872 Veis_4872 Veis_4940 Veis_4940
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
Veis_0274PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_1997 aminotransferase, class I and II. (409 aa)
dapDKEGG: rfr:Rfer_2046 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; Belongs to the transferase hexapeptide repeat family. (277 aa)
dapESuccinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (401 aa)
Veis_0362Putative transcriptional regulator, GntR family; PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4240 aminotransferase, class I and II. (426 aa)
Veis_0720PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bch:Bcen2424_6609 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. (424 aa)
Veis_0722TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr3302 dihydrodipicolinate synthase. (298 aa)
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (282 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (296 aa)
Veis_1762Putative transcriptional regulator, GntR family; PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2746 aminotransferase, class I and II. (396 aa)
argDTIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: pol:Bpro_3572 acetylornithine and succinylornithine aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (400 aa)
Veis_2368PFAM: dihydrodipicolinate synthetase; KEGG: reh:H16_B1831 dihydrodipicolinate synthase (DapA); Belongs to the DapA family. (301 aa)
Veis_2663PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase, NAD-binding; KEGG: rfr:Rfer_1912 homoserine dehydrogenase. (444 aa)
Veis_2739PFAM: dihydrodipicolinate synthetase; KEGG: lxx:Lxx10270 dihydrodipicolinate synthase; Belongs to the DapA family. (312 aa)
Veis_4113PFAM: dihydrodipicolinate synthetase; KEGG: eca:ECA1002 putative dihydrodipicolinate synthase; Belongs to the DapA family. (311 aa)
Veis_4390PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. (413 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (382 aa)
murFUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (475 aa)
Veis_4686Dihydrodipicolinate synthetase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (298 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (414 aa)
Veis_4872KEGG: pol:Bpro_3612 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; Belongs to the aspartate-semialdehyde dehydrogenase family. (379 aa)
Veis_4940KEGG: rfr:Rfer_1353 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family. (422 aa)
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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