STRINGSTRING
Swoo_0008 Swoo_0008 Swoo_0009 Swoo_0009 Swoo_0010 Swoo_0010 Swoo_0575 Swoo_0575 Swoo_1136 Swoo_1136 Swoo_1220 Swoo_1220 Swoo_1221 Swoo_1221 Swoo_1261 Swoo_1261 glsA glsA Swoo_1841 Swoo_1841 Swoo_2101 Swoo_2101 Swoo_2140 Swoo_2140 Swoo_2300 Swoo_2300 Swoo_2756 Swoo_2756 Swoo_2943 Swoo_2943 Swoo_3007 Swoo_3007 Swoo_3413 Swoo_3413 Swoo_4643 Swoo_4643 Swoo_4739 Swoo_4739
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_0008LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (246 aa)
Swoo_0009TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sse:Ssed_0011 UreA amidolyase related protein. (313 aa)
Swoo_0010PFAM: Allophanate hydrolase subunit 1; KEGG: sse:Ssed_0012 hypothetical protein. (226 aa)
Swoo_0575PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mca:MCA2508 oxygenase, putative. (321 aa)
Swoo_1136PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_1067 putative glutamate synthase (NADPH). (598 aa)
Swoo_1220TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_1125 glutamate synthase, small subunit. (469 aa)
Swoo_1221PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin). (1482 aa)
Swoo_1261PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sse:Ssed_1166 oxidoreductase FAD-binding domain protein. (365 aa)
glsAPFAM: Glutaminase, core; KEGG: sse:Ssed_1222 glutaminase; Belongs to the glutaminase family. (304 aa)
Swoo_1841PFAM: ferredoxin-dependent glutamate synthase; KEGG: slo:Shew_1659 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family. (547 aa)
Swoo_2101PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_2532 hypothetical protein. (455 aa)
Swoo_2140PFAM: NAD-glutamate dehydrogenase; KEGG: sse:Ssed_2476 NAD-glutamate dehydrogenase. (1614 aa)
Swoo_2300PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_2310 NADH:flavin oxidoreductase/NADH oxidase. (671 aa)
Swoo_2756PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sse:Ssed_1832 oxidoreductase FAD-binding domain protein. (339 aa)
Swoo_2943PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_1665 NADH:flavin oxidoreductase/NADH oxidase. (672 aa)
Swoo_3007PFAM: ferredoxin-dependent glutamate synthase; SMART: zinc finger CDGSH-type domain protein; KEGG: sse:Ssed_3552 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family. (516 aa)
Swoo_34134Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)
Swoo_4643TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: spl:Spea_3916 glutamine synthetase, type I. (469 aa)
Swoo_4739TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: vfi:VF1064 glutamate decarboxylase; Belongs to the group II decarboxylase family. (464 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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