STRINGSTRING
glsA glsA Swoo_2101 Swoo_2101 Swoo_2140 Swoo_2140 Swoo_4643 Swoo_4643 Swoo_4739 Swoo_4739
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
glsAPFAM: Glutaminase, core; KEGG: sse:Ssed_1222 glutaminase; Belongs to the glutaminase family. (304 aa)
Swoo_2101PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_2532 hypothetical protein. (455 aa)
Swoo_2140PFAM: NAD-glutamate dehydrogenase; KEGG: sse:Ssed_2476 NAD-glutamate dehydrogenase. (1614 aa)
Swoo_4643TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: spl:Spea_3916 glutamine synthetase, type I. (469 aa)
Swoo_4739TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: vfi:VF1064 glutamate decarboxylase; Belongs to the group II decarboxylase family. (464 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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