STRINGSTRING
fadA fadA fadB fadB Swoo_0119 Swoo_0119 Swoo_0214 Swoo_0214 Swoo_0222 Swoo_0222 Swoo_1033 Swoo_1033 Swoo_1504 Swoo_1504 Swoo_1916 Swoo_1916 Swoo_2323 Swoo_2323 Swoo_2542 Swoo_2542 Swoo_2604 Swoo_2604 Swoo_3026 Swoo_3026 fadI fadI Swoo_3197 Swoo_3197 Swoo_3198 Swoo_3198 Swoo_3199 Swoo_3199 Swoo_3200 Swoo_3200 Swoo_3202 Swoo_3202 Swoo_3222 Swoo_3222 Swoo_3223 Swoo_3223 Swoo_3224 Swoo_3224 Swoo_3225 Swoo_3225 Swoo_3226 Swoo_3226 Swoo_3227 Swoo_3227 Swoo_3228 Swoo_3228 Swoo_3229 Swoo_3229 Swoo_3235 Swoo_3235 Swoo_3236 Swoo_3236 Swoo_4199 Swoo_4199 Swoo_4794 Swoo_4794
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fadAacetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed. (387 aa)
fadBFatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. (716 aa)
Swoo_0119PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cps:CPS_2528 enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (281 aa)
Swoo_0214PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mlo:mll4199 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (696 aa)
Swoo_0222KEGG: pla:Plav_2698 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
Swoo_1033PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_0984 acyl-CoA dehydrogenase domain protein. (391 aa)
Swoo_1504PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: spl:Spea_1234 protein of unknown function DUF1974. (745 aa)
Swoo_1916PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sse:Ssed_2696 acyl-CoA dehydrogenase domain protein. (596 aa)
Swoo_2323PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_2292 acyl-CoA dehydrogenase domain protein. (585 aa)
Swoo_2542PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: sse:Ssed_2067 acyl-CoA dehydrogenase domain protein. (758 aa)
Swoo_2604PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: sse:Ssed_1999 acyl-CoA dehydrogenase domain protein. (815 aa)
Swoo_3026Fatty acid oxidation complex, alpha subunit FadJ; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (713 aa)
fadIacetyl-CoA C-acyltransferase FadI; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed. (436 aa)
Swoo_3197KEGG: sse:Ssed_1478 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; Belongs to the HIBADH-related family. (305 aa)
Swoo_3198PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_1477 enoyl-CoA hydratase/isomerase. (381 aa)
Swoo_3199PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_1476 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
Swoo_3200PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_1475 butyryl-CoA dehydrogenase. (385 aa)
Swoo_3202KEGG: sse:Ssed_1473 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
Swoo_3222Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: slo:Shew_2569 transcriptional regulator, MerR family. (132 aa)
Swoo_3223PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_1458 acyl-CoA dehydrogenase domain protein. (389 aa)
Swoo_3224Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: spl:Spea_2798 propionyl-CoA carboxylase. (535 aa)
Swoo_3225PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_1456 enoyl-CoA hydratase/isomerase. (279 aa)
Swoo_3226Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_1455 carbamoyl-phosphate synthase L chain, ATP-binding. (709 aa)
Swoo_3227PFAM: pyruvate carboxyltransferase; KEGG: sse:Ssed_1454 pyruvate carboxyltransferase. (296 aa)
Swoo_3228KEGG: spl:Spea_2803 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase. (234 aa)
Swoo_32293-oxoacid CoA-transferase, B subunit; KEGG: sse:Ssed_1452 3-oxoacid CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase. (218 aa)
Swoo_3235PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: sse:Ssed_1446 electron transfer flavoprotein, alpha subunit. (307 aa)
Swoo_3236PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sse:Ssed_1445 electron transfer flavoprotein beta-subunit. (249 aa)
Swoo_4199PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_0770 enoyl-CoA hydratase/isomerase. (245 aa)
Swoo_4794Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. (549 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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