STRINGSTRING
Swoo_1715 Swoo_1715 Swoo_1716 Swoo_1716 Swoo_1718 Swoo_1718 Swoo_1719 Swoo_1719 Swoo_1932 Swoo_1932 Swoo_2336 Swoo_2336
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_1715Phenylalanine-4-hydroxylase; KEGG: sse:Ssed_2930 phenylalanine 4-monooxygenase; TIGRFAM: phenylalanine-4-hydroxylase; PFAM: aromatic amino acid hydroxylase. (265 aa)
Swoo_1716PFAM: transcriptional coactivator/pterin dehydratase; KEGG: sse:Ssed_2929 transcriptional coactivator/pterin dehydratase. (112 aa)
Swoo_1718PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sse:Ssed_2927 fumarylacetoacetate (FAA) hydrolase. (328 aa)
Swoo_1719TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: sse:Ssed_2926 response regulator receiver protein. (220 aa)
Swoo_1932KEGG: sse:Ssed_2687 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (346 aa)
Swoo_2336KEGG: pha:PSHAb0338 homogentisate 1,2-dioxygenase (Homogentisicase) (homogentisate oxygenase) (Homogentisic acid oxidase) [HGD]; TIGRFAM: homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase. (430 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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