STRINGSTRING
yihI yihI Swoo_0621 Swoo_0621 Swoo_1223 Swoo_1223 zapC zapC seqA seqA fadR fadR Swoo_2785 Swoo_2785 Swoo_2786 Swoo_2786 Swoo_2787 Swoo_2787 Swoo_2885 Swoo_2885 rraB rraB Swoo_4711 Swoo_4711
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yihIProtein of unknown function DUF414; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. (178 aa)
Swoo_0621Methionine repressor, MetJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. (104 aa)
Swoo_1223PFAM: Hpt domain protein; KEGG: sse:Ssed_1128 Hpt protein. (121 aa)
zapCProtein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. (181 aa)
seqASeqA family protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. (179 aa)
fadRFatty acid metabolism transcriptional regulator FadR; Multifunctional regulator of fatty acid metabolism. (249 aa)
Swoo_2785PFAM: 37kDa nucleoid-associated protein; KEGG: sse:Ssed_1810 37 kDa nucleoid-associated protein. (343 aa)
Swoo_2786PFAM: protein of unknown function DUF1414; KEGG: sse:Ssed_1809 protein of unknown function DUF1414; Belongs to the UPF0352 family. (71 aa)
Swoo_2787PFAM: sulfatase; KEGG: sse:Ssed_1808 sulfatase. (595 aa)
Swoo_2885PFAM: protein of unknown function DUF412; KEGG: sse:Ssed_1706 protein of unknown function DUF412. (132 aa)
rraBProtein of unknown function DUF1260; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. (144 aa)
Swoo_4711PFAM: regulatory protein TetR; KEGG: sse:Ssed_4339 transcriptional regulator, TetR family. (204 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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