STRINGSTRING
Swoo_2246 Swoo_2246 Swoo_2247 Swoo_2247 Swoo_2248 Swoo_2248 pqqE pqqE pqqD pqqD pqqC pqqC pqqB pqqB Swoo_2256 Swoo_2256 Swoo_2257 Swoo_2257 Swoo_2258 Swoo_2258 Swoo_2259 Swoo_2259 Swoo_2260 Swoo_2260 Swoo_2261 Swoo_2261
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_2246KEGG: cps:CPS_1882 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein. (854 aa)
Swoo_2247PFAM: domain of unknown function DUF1745; KEGG: cps:CPS_1883 hypothetical protein. (382 aa)
Swoo_2248PFAM: peptidase M16 domain protein; KEGG: cps:CPS_0856 putative metallopeptidase, M16 family. (647 aa)
pqqECoenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). (371 aa)
pqqDCoenzyme PQQ synthesis D; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway. (88 aa)
pqqCCoenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. (249 aa)
pqqBCoenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. (305 aa)
Swoo_2256KEGG: cps:CPS_1889 hypothetical protein; Belongs to the bacterial solute-binding protein 3 family. (299 aa)
Swoo_2257KEGG: pat:Patl_1857 cytochrome c550. (161 aa)
Swoo_2258KEGG: cps:CPS_1891 hypothetical protein. (400 aa)
Swoo_2259TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein. (326 aa)
Swoo_2260PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_1893 ABC transporter, ATP-binding protein. (239 aa)
Swoo_2261PFAM: ABC-2 type transporter; KEGG: cps:CPS_1894 putative daunorubicin resistance ABC transporter, permease protein. (260 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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