STRINGSTRING
Swoo_2512 Swoo_2512 Swoo_2513 Swoo_2513 Swoo_2514 Swoo_2514 Swoo_2515 Swoo_2515 Swoo_2516 Swoo_2516 Swoo_2517 Swoo_2517 Swoo_2518 Swoo_2518 Swoo_2520 Swoo_2520 Swoo_2521 Swoo_2521 Swoo_2522 Swoo_2522 Swoo_2523 Swoo_2523 Swoo_2524 Swoo_2524 Swoo_2525 Swoo_2525 Swoo_2526 Swoo_2526 Swoo_2527 Swoo_2527 Swoo_2528 Swoo_2528 Swoo_2529 Swoo_2529
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_2512PFAM: PAAR repeat-containing protein; KEGG: eca:ECA3426 putative phospholipase. (461 aa)
Swoo_2513TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA3427 hypothetical protein. (682 aa)
Swoo_2514TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: aha:AHA_1826 hemolysin co-regulated protein. (172 aa)
Swoo_2515KEGG: vco:VC0395_0015 hypothetical protein. (401 aa)
Swoo_2516TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein. (1187 aa)
Swoo_2517TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: vco:VC0395_0018 hypothetical protein. (467 aa)
Swoo_2518KEGG: vch:VCA0118 hypothetical protein. (213 aa)
Swoo_2520KEGG: vco:VC0395_0021 ClpB protein; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family. (863 aa)
Swoo_2521KEGG: vco:VC0395_0022 hypothetical protein. (261 aa)
Swoo_2522TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: vch:VCA0114 hypothetical protein. (444 aa)
Swoo_2523KEGG: plu:plu0366 hypothetical protein. (176 aa)
Swoo_2524TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: vch:VCA0112 hypothetical protein. (424 aa)
Swoo_2525TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: vch:VCA0111 hypothetical protein. (335 aa)
Swoo_2526TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: mmw:Mmwyl1_1199 protein of unknown function DUF879. (588 aa)
Swoo_2527TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: vch:VCA0109 hypothetical protein. (141 aa)
Swoo_2528TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: vco:VC0395_0030 hypothetical protein. (491 aa)
Swoo_2529TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: vch:VCA0107 hypothetical protein. (162 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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