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murC murC murD murD murF murF purM purM murE murE Swoo_4562 Swoo_4562 Swoo_4643 Swoo_4643 birA birA Swoo_2749 Swoo_2749 nadE nadE Swoo_2983 Swoo_2983 pyrG pyrG carB carB carA carA Swoo_0098 Swoo_0098 Swoo_0211 Swoo_0211 Swoo_0229 Swoo_0229 purD purD argG argG Swoo_0544 Swoo_0544 Swoo_0585 Swoo_0585 panC panC mpl mpl Swoo_3984 Swoo_3984 Swoo_4038 Swoo_4038 gshB-2 gshB-2 purA purA fhs fhs ddl ddl Swoo_2658 Swoo_2658 queC queC Swoo_2101 Swoo_2101 purC purC bioD bioD purL purL guaA guaA Swoo_1155 Swoo_1155 Swoo_1130 Swoo_1130 gshB gshB Swoo_0627 Swoo_0627 gshA gshA purK purK tilS tilS
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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experimentally determined
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murCUDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (489 aa)
murDUDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (442 aa)
murFUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (455 aa)
purMKEGG: sse:Ssed_1845 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein. (345 aa)
murEUDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. (502 aa)
Swoo_4562Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (408 aa)
Swoo_4643TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: spl:Spea_3916 glutamine synthetase, type I. (469 aa)
birAbiotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. (320 aa)
Swoo_2749TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: sse:Ssed_1838 asparagine synthase (glutamine-hydrolyzing). (557 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source. (276 aa)
Swoo_2983TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sse:Ssed_1653 dihydrofolate synthase. (421 aa)
pyrGCTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (545 aa)
carBTIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: sse:Ssed_3403 carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family. (1072 aa)
carATIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: sse:Ssed_3404 carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family. (381 aa)
Swoo_0098KEGG: sse:Ssed_0135 hypothetical protein. (250 aa)
Swoo_0211KEGG: psb:Psyr_0006 putative phenylacetaldoxime dehydratase. (332 aa)
Swoo_0229PFAM: Amidase; KEGG: bpa:BPP3587 indole acetimide hydrolase. (455 aa)
purDKEGG: sse:Ssed_0443 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family. (430 aa)
argGPFAM: argininosuccinate synthase; KEGG: sse:Ssed_4273 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (408 aa)
Swoo_0544acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (452 aa)
Swoo_0585PFAM: IucA/IucC family protein; KEGG: vfi:VFA0161 aerobactin siderophore biosynthesis protein IucA. (925 aa)
panCPantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (281 aa)
mplUDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily. (461 aa)
Swoo_3984PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: spl:Spea_3311 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (207 aa)
Swoo_4038PFAM: Amidase; KEGG: vei:Veis_0353 amidase; Belongs to the amidase family. (504 aa)
gshB-2KEGG: sse:Ssed_3973 glutathione synthase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; Belongs to the prokaryotic GSH synthase family. (316 aa)
purAAdenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (431 aa)
fhsPFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: sse:Ssed_0612 formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (570 aa)
ddlD-alanine--D-alanine ligase; Cell wall formation. (359 aa)
Swoo_2658PFAM: IucA/IucC family protein; KEGG: spe:Spro_0920 IucA/IucC family protein. (572 aa)
queCexsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. (233 aa)
Swoo_2101PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_2532 hypothetical protein. (455 aa)
purCKEGG: sse:Ssed_2552 phosphoribosylaminoimidazolesuccinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase. (368 aa)
bioDDethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (222 aa)
purLPhosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. (1293 aa)
guaAGMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. (525 aa)
Swoo_1155KEGG: sse:Ssed_1074 GatB/YqeY domain protein. (147 aa)
Swoo_1130Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_1060 glutamate--putrescine ligase. (449 aa)
gshBGlutathione synthase; PFAM: protein of unknown function DUF201; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; KEGG: spl:Spea_3221 glutathione synthase; Belongs to the prokaryotic GSH synthase family. (345 aa)
Swoo_0627KEGG: sse:Ssed_4037 hypothetical protein. (71 aa)
gshATIGRFAM: glutamate--cysteine ligase; KEGG: sse:Ssed_1329 glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. (542 aa)
purKPhosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR). (382 aa)
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (470 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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