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Swoo_3200 Swoo_3200 mnmC mnmC Swoo_2999 Swoo_2999 Swoo_2930 Swoo_2930 Swoo_2756 Swoo_2756 Swoo_2714 Swoo_2714 Swoo_2673 Swoo_2673 Swoo_2604 Swoo_2604 Swoo_2542 Swoo_2542 Swoo_2443 Swoo_2443 Swoo_2360 Swoo_2360 Swoo_2335 Swoo_2335 Swoo_2334 Swoo_2334 Swoo_2323 Swoo_2323 Swoo_2208 Swoo_2208 Swoo_2019 Swoo_2019 Swoo_1930 Swoo_1930 Swoo_1916 Swoo_1916 Swoo_1835 Swoo_1835 dusC dusC Swoo_1540 Swoo_1540 Swoo_1518 Swoo_1518 Swoo_1507 Swoo_1507 Swoo_1504 Swoo_1504 kmo kmo Swoo_1306 Swoo_1306 Swoo_1261 Swoo_1261 Swoo_1251 Swoo_1251 Swoo_1196 Swoo_1196 Swoo_1075 Swoo_1075 Swoo_1033 Swoo_1033 Swoo_0929 Swoo_0929 Swoo_0776 Swoo_0776 nhaP2 nhaP2 hmp hmp Swoo_0672 Swoo_0672 Swoo_0575 Swoo_0575 Swoo_0509 Swoo_0509 dusB dusB Swoo_0367 Swoo_0367 Swoo_0321 Swoo_0321 Swoo_0217 Swoo_0217 Swoo_0187 Swoo_0187 Swoo_0125 Swoo_0125 Swoo_0121 Swoo_0121 Swoo_3235 Swoo_3235 Swoo_3288 Swoo_3288 Swoo_3305 Swoo_3305 Swoo_3308 Swoo_3308 nqrF nqrF nqrF-2 nqrF-2 Swoo_3694 Swoo_3694 Swoo_3699 Swoo_3699 Swoo_3837 Swoo_3837 Swoo_3854 Swoo_3854 Swoo_3936 Swoo_3936 Swoo_3938 Swoo_3938 Swoo_3970 Swoo_3970 Swoo_3972 Swoo_3972 Swoo_4077 Swoo_4077 Swoo_4105 Swoo_4105 dusA dusA Swoo_4289 Swoo_4289 Swoo_4359 Swoo_4359 Swoo_4606 Swoo_4606 murB murB mnmG mnmG Swoo_3223 Swoo_3223
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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co-expression
protein homology
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Swoo_3200PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_1475 butyryl-CoA dehydrogenase. (385 aa)
mnmCtRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family. (696 aa)
Swoo_2999Gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase; KEGG: sse:Ssed_3542 glucose-methanol-choline oxidoreductase. (561 aa)
Swoo_2930PFAM: glucose-methanol-choline oxidoreductase; KEGG: cps:CPS_3053 putative oxidoreductase. (527 aa)
Swoo_2756PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sse:Ssed_1832 oxidoreductase FAD-binding domain protein. (339 aa)
Swoo_2714PFAM: FAD linked oxidase domain protein; KEGG: sse:Ssed_1872 D-lactate dehydrogenase (cytochrome). (1023 aa)
Swoo_2673PFAM: Rieske [2Fe-2S] domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: amr:AM1_3309 thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family. (649 aa)
Swoo_2604PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: sse:Ssed_1999 acyl-CoA dehydrogenase domain protein. (815 aa)
Swoo_2542PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: sse:Ssed_2067 acyl-CoA dehydrogenase domain protein. (758 aa)
Swoo_2443PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sme:SMb21143 mercuric reductase. (469 aa)
Swoo_2360PFAM: PepSY-associated TM helix domain protein; KEGG: sse:Ssed_2260 iron-regulated membrane protein-like protein. (353 aa)
Swoo_2335KEGG: sse:Ssed_2276 hypothetical protein. (246 aa)
Swoo_2334PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sse:Ssed_2277 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF. (658 aa)
Swoo_2323PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_2292 acyl-CoA dehydrogenase domain protein. (585 aa)
Swoo_2208PFAM: tryptophan halogenase; KEGG: sfr:Sfri_1786 tryptophan halogenase. (502 aa)
Swoo_2019PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: fra:Francci3_2770 4-hydroxyphenylacetate 3-hydroxylase. (504 aa)
Swoo_1930PFAM: protein of unknown function DUF482; KEGG: spl:Spea_1865 protein of unknown function DUF482. (405 aa)
Swoo_1916PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sse:Ssed_2696 acyl-CoA dehydrogenase domain protein. (596 aa)
Swoo_1835KEGG: sse:Ssed_2816 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (588 aa)
dusCDihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily. (315 aa)
Swoo_1540PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: sse:Ssed_1428 protein of unknown function DUF21. (362 aa)
Swoo_1518PFAM: CBS domain containing protein; KEGG: spl:Spea_1244 CBS domain containing protein. (186 aa)
Swoo_1507PFAM: PepSY-associated TM helix domain protein; KEGG: sfr:Sfri_0204 PepSY-associated TM helix domain protein. (525 aa)
Swoo_1504PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: spl:Spea_1234 protein of unknown function DUF1974. (745 aa)
kmoKynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily. (456 aa)
Swoo_1306PFAM: tryptophan halogenase; KEGG: sdn:Sden_2707 tryptophan halogenase. (507 aa)
Swoo_1261PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sse:Ssed_1166 oxidoreductase FAD-binding domain protein. (365 aa)
Swoo_1251PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sse:Ssed_1156 protein of unknown function DUF21. (424 aa)
Swoo_1196Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (565 aa)
Swoo_1075PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: spl:Spea_0907 protein of unknown function DUF21. (443 aa)
Swoo_1033PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_0984 acyl-CoA dehydrogenase domain protein. (391 aa)
Swoo_0929TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: sse:Ssed_0830 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (522 aa)
Swoo_0776Sulfite reductase (NADPH) flavoprotein, alpha chain; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. (594 aa)
nhaP2Sodium/hydrogen exchanger; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. (576 aa)
hmpGlobin; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily. (400 aa)
Swoo_0672PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sse:Ssed_3863 glucose-methanol-choline oxidoreductase. (532 aa)
Swoo_0575PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mca:MCA2508 oxygenase, putative. (321 aa)
Swoo_0509KEGG: sse:Ssed_4114 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (674 aa)
dusBTIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (322 aa)
Swoo_0367PFAM: glucose-methanol-choline oxidoreductase; KEGG: sus:Acid_7382 glucose-methanol-choline oxidoreductase. (565 aa)
Swoo_0321TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: spl:Spea_0421 dihydrolipoamide dehydrogenase. (476 aa)
Swoo_0217PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase NAD binding; KEGG: mmw:Mmwyl1_3091 phenylacetate-CoA oxygenase/reductase, PaaK subunit. (357 aa)
Swoo_0187Globin; KEGG: sse:Ssed_0207 globin; Belongs to the globin family. (137 aa)
Swoo_0125PFAM: monooxygenase FAD-binding; KEGG: bme:BMEI1017 salicylate hydroxylase. (374 aa)
Swoo_0121TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_0142 glutathione-disulfide reductase. (451 aa)
Swoo_3235PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: sse:Ssed_1446 electron transfer flavoprotein, alpha subunit. (307 aa)
Swoo_3288PFAM: flavodoxin/nitric oxide synthase; KEGG: sse:Ssed_3168 flavodoxin/nitric oxide synthase. (153 aa)
Swoo_3305KEGG: maq:Maqu_0016 hypothetical protein. (145 aa)
Swoo_3308PFAM: PepSY-associated TM helix domain protein; KEGG: sse:Ssed_1344 PepSY-associated TM helix domain protein. (541 aa)
nqrFNADH:ubiquinone oxidoreductase, subunit F; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway. (405 aa)
nqrF-2NADH:ubiquinone oxidoreductase, subunit F; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway. (415 aa)
Swoo_3694TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sse:Ssed_3469 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. (398 aa)
Swoo_3699PFAM: CBS domain containing protein; transporter-associated region; KEGG: sse:Ssed_3474 CBS domain containing protein. (291 aa)
Swoo_3837PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase. (524 aa)
Swoo_3854PFAM: FAD linked oxidase domain protein; KEGG: sdn:Sden_3156 FAD linked oxidase-like protein. (574 aa)
Swoo_3936PFAM: tryptophan halogenase; KEGG: sde:Sde_1096 tryptophan halogenase, putative. (511 aa)
Swoo_3938PFAM: tryptophan halogenase; KEGG: ccr:CC_0971 tryptophan halogenase, putative. (505 aa)
Swoo_3970TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sse:Ssed_3676 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. (404 aa)
Swoo_39722-polyprenyl-6-methoxyphenol 4-hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; KEGG: sse:Ssed_3677 2-polyprenyl-6-methoxyphenol 4-hydroxylase. (416 aa)
Swoo_4077PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_3727 NADH dehydrogenase. (548 aa)
Swoo_4105PFAM: BLUF domain protein; KEGG: pcr:Pcryo_1625 hypothetical protein. (156 aa)
dusATIM-barrel protein, yjbN family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (331 aa)
Swoo_4289PFAM: monooxygenase FAD-binding; tryptophan halogenase; KEGG: ccr:CC_0555 hypothetical protein. (372 aa)
Swoo_4359Alkylglycerone-phosphate synthase; PFAM: FAD linked oxidase domain protein; KEGG: sse:Ssed_0594 FAD linked oxidase domain protein. (559 aa)
Swoo_4606Tryptophan halogenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sse:Ssed_0315 tryptophan halogenase. (420 aa)
murBUDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (343 aa)
mnmGGlucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (630 aa)
Swoo_3223PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_1458 acyl-CoA dehydrogenase domain protein. (389 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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